J6_8EVP_002
3D structure
- PDB id
- 8EVP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- U(OMU)GA*UUUG*CA*UGUC*GCCUAUCGAUCC*(OMG)GUGCCAGAAAA
- Length
- 38 nucleotides
- Bulged bases
- 8EVP|1|A1|G|2418, 8EVP|1|A1|C|2760, 8EVP|1|A1|A|2799, 8EVP|1|A1|A|2801, 8EVP|1|A1|A|2802
- QA status
- Modified nucleotides: OMU, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8EVP|1|A1|U|2416
8EVP|1|A1|OMU|2417
8EVP|1|A1|G|2418
8EVP|1|A1|A|2419
*
8EVP|1|A1|U|2611
8EVP|1|A1|U|2612
8EVP|1|A1|U|2613
8EVP|1|A1|G|2614
*
8EVP|1|A1|C|2627
8EVP|1|A1|A|2628
*
8EVP|1|A1|U|2650
8EVP|1|A1|G|2651
8EVP|1|A1|U|2652
8EVP|1|A1|C|2653
*
8EVP|1|A1|G|2754
8EVP|1|A1|C|2755
8EVP|1|A1|C|2756
8EVP|1|A1|U|2757
8EVP|1|A1|A|2758
8EVP|1|A1|U|2759
8EVP|1|A1|C|2760
8EVP|1|A1|G|2761
8EVP|1|A1|A|2762
8EVP|1|A1|U|2763
8EVP|1|A1|C|2764
8EVP|1|A1|C|2765
*
8EVP|1|A1|OMG|2793
8EVP|1|A1|G|2794
8EVP|1|A1|U|2795
8EVP|1|A1|G|2796
8EVP|1|A1|C|2797
8EVP|1|A1|C|2798
8EVP|1|A1|A|2799
8EVP|1|A1|G|2800
8EVP|1|A1|A|2801
8EVP|1|A1|A|2802
8EVP|1|A1|A|2803
8EVP|1|A1|A|2804
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AA
- 60S ribosomal protein L2-A
- Chain AN
- 60S ribosomal protein L15-A
- Chain AQ
- 60S ribosomal protein L18-A
- Chain AT
- 60S ribosomal protein L21-A
- Chain Aa
- 60S ribosomal protein L28
- Chain Ab
- RPL29 isoform 1
- Chain Ao
- 60S ribosomal protein L42-A
Coloring options: