J6_8FL3_004

3D structure

PDB id

8FL3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State I2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.53 Å

Loop

Sequence

GAC(PSU)G*CAAAG*UGAUU(PSU)CUG*CG*CUUAAGGUAGC(5MC)AA(A2M)*UGAA(OMU)GGA(PSU)GA(A2M)C

Length

49 nucleotides

Bulged bases

8FL3|1|L3|G|3776, 8FL3|1|L3|A|3779, 8FL3|1|L3|G|3815, 8FL3|1|L3|G|3823

QA status

Modified nucleotides: PSU, 5MC, A2M, OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8FL3|1|L3|G|3634
8FL3|1|L3|A|3635
8FL3|1|L3|C|3636
8FL3|1|L3|PSU|3637
8FL3|1|L3|G|3638
*
8FL3|1|L3|C|3650
8FL3|1|L3|A|3651
8FL3|1|L3|A|3652
8FL3|1|L3|A|3653
8FL3|1|L3|G|3654
*
8FL3|1|L3|U|3690
8FL3|1|L3|G|3691
8FL3|1|L3|A|3692
8FL3|1|L3|U|3693
8FL3|1|L3|U|3694
8FL3|1|L3|PSU|3695
8FL3|1|L3|C|3696
8FL3|1|L3|U|3697
8FL3|1|L3|G|3698
*
8FL3|1|L3|C|3752
8FL3|1|L3|G|3753
*
8FL3|1|L3|C|3771
8FL3|1|L3|U|3772
8FL3|1|L3|U|3773
8FL3|1|L3|A|3774
8FL3|1|L3|A|3775
8FL3|1|L3|G|3776
8FL3|1|L3|G|3777
8FL3|1|L3|U|3778
8FL3|1|L3|A|3779
8FL3|1|L3|G|3780
8FL3|1|L3|C|3781
8FL3|1|L3|5MC|3782
8FL3|1|L3|A|3783
8FL3|1|L3|A|3784
8FL3|1|L3|A2M|3785
*
8FL3|1|L3|U|3814
8FL3|1|L3|G|3815
8FL3|1|L3|A|3816
8FL3|1|L3|A|3817
8FL3|1|L3|OMU|3818
8FL3|1|L3|G|3819
8FL3|1|L3|G|3820
8FL3|1|L3|A|3821
8FL3|1|L3|PSU|3822
8FL3|1|L3|G|3823
8FL3|1|L3|A|3824
8FL3|1|L3|A2M|3825
8FL3|1|L3|C|3826

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LX

60S ribosomal protein L37a

Chain NC

Nucleolar GTP-binding protein 2

Chain NU

Testis-expressed protein 10

Chain SF

60S ribosomal protein L8