J6_8FRU_001
3D structure
- PDB id
- 8FRU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S subunit of the Giardia lamblia 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.49 Å
Loop
- Sequence
- GGCGAC*GGAGGAGAAAC*GGAUU*AGGAG*CUAAAUAC*GGC
- Length
- 38 nucleotides
- Bulged bases
- 8FRU|1|1|G|23, 8FRU|1|1|A|65, 8FRU|1|4|G|34
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8FRU|1|1|G|20
8FRU|1|1|G|21
8FRU|1|1|C|22
8FRU|1|1|G|23
8FRU|1|1|A|24
8FRU|1|1|C|25
*
8FRU|1|1|G|56
8FRU|1|1|G|57
8FRU|1|1|A|58
8FRU|1|1|G|59
8FRU|1|1|G|60
8FRU|1|1|A|61
8FRU|1|1|G|62
8FRU|1|1|A|63
8FRU|1|1|A|64
8FRU|1|1|A|65
8FRU|1|1|C|66
*
8FRU|1|1|G|73
8FRU|1|1|G|74
8FRU|1|1|A|75
8FRU|1|1|U|76
8FRU|1|1|U|77
*
8FRU|1|1|A|102
8FRU|1|1|G|103
8FRU|1|1|G|104
8FRU|1|1|A|105
8FRU|1|1|G|106
*
8FRU|1|1|C|271
8FRU|1|1|U|272
8FRU|1|1|A|273
8FRU|1|1|A|274
8FRU|1|1|A|275
8FRU|1|1|U|276
8FRU|1|1|A|277
8FRU|1|1|C|278
*
8FRU|1|4|G|33
8FRU|1|4|G|34
8FRU|1|4|C|35
Current chains
- Chain 1
- 28S rRNA
- Chain 4
- 5.8S rRNA
Nearby chains
- Chain C
- 60S ribosomal protein uL4
- Chain L
- 60S ribosomal protein eL13
- Chain N
- 60S ribosomal protein eL15
- Chain h
- 60S ribosomal protein uL29
- Chain i
- 60S ribosomal protein eL36
- Chain j
- 60S ribosomal protein eL37
Coloring options: