J6_8FRU_002
3D structure
- PDB id
- 8FRU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S subunit of the Giardia lamblia 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.49 Å
Loop
- Sequence
- UUGA*UUCG*CG*CGUC*GCCUACCGAUCC*GGUGGCAGAAAA
- Length
- 38 nucleotides
- Bulged bases
- 8FRU|1|1|G|1904, 8FRU|1|1|C|2182, 8FRU|1|1|A|2220, 8FRU|1|1|A|2222, 8FRU|1|1|A|2223
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8FRU|1|1|U|1902
8FRU|1|1|U|1903
8FRU|1|1|G|1904
8FRU|1|1|A|1905
*
8FRU|1|1|U|2033
8FRU|1|1|U|2034
8FRU|1|1|C|2035
8FRU|1|1|G|2036
*
8FRU|1|1|C|2049
8FRU|1|1|G|2050
*
8FRU|1|1|C|2072
8FRU|1|1|G|2073
8FRU|1|1|U|2074
8FRU|1|1|C|2075
*
8FRU|1|1|G|2176
8FRU|1|1|C|2177
8FRU|1|1|C|2178
8FRU|1|1|U|2179
8FRU|1|1|A|2180
8FRU|1|1|C|2181
8FRU|1|1|C|2182
8FRU|1|1|G|2183
8FRU|1|1|A|2184
8FRU|1|1|U|2185
8FRU|1|1|C|2186
8FRU|1|1|C|2187
*
8FRU|1|1|G|2214
8FRU|1|1|G|2215
8FRU|1|1|U|2216
8FRU|1|1|G|2217
8FRU|1|1|G|2218
8FRU|1|1|C|2219
8FRU|1|1|A|2220
8FRU|1|1|G|2221
8FRU|1|1|A|2222
8FRU|1|1|A|2223
8FRU|1|1|A|2224
8FRU|1|1|A|2225
Current chains
- Chain 1
- 28S rRNA
Nearby chains
- Chain A
- 60S ribosomal protein uL2
- Chain N
- 60S ribosomal protein eL15
- Chain Q
- 60S ribosomal protein eL18
- Chain T
- 60S ribosomal protein eL21
- Chain a
- 60S ribosomal protein uL15
- Chain b
- 60S ribosomal protein eL29
- Chain o
- 60S ribosomal protein eL42
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