3D structure

PDB id
8G61 (explore in PDB, NAKB, or RNA 3D Hub)
Description
mRNA decoding in human is kinetically and structurally distinct from bacteria (AC state)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.94 Å

Loop

Sequence
(PSU)UGA*UUUG*CA*(OMU)(OMG)UC*GCCUCACGAUCC*(OMG)GUGUCAGAAAA
Length
38 nucleotides
Bulged bases
8G61|1|L5|G|3922, 8G61|1|L5|C|4337, 8G61|1|L5|A|4376, 8G61|1|L5|A|4378, 8G61|1|L5|A|4379
QA status
Modified nucleotides: PSU, OMU, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8G61|1|L5|PSU|3920
8G61|1|L5|U|3921
8G61|1|L5|G|3922
8G61|1|L5|A|3923
*
8G61|1|L5|U|4188
8G61|1|L5|U|4189
8G61|1|L5|U|4190
8G61|1|L5|G|4191
*
8G61|1|L5|C|4204
8G61|1|L5|A|4205
*
8G61|1|L5|OMU|4227
8G61|1|L5|OMG|4228
8G61|1|L5|U|4229
8G61|1|L5|C|4230
*
8G61|1|L5|G|4331
8G61|1|L5|C|4332
8G61|1|L5|C|4333
8G61|1|L5|U|4334
8G61|1|L5|C|4335
8G61|1|L5|A|4336
8G61|1|L5|C|4337
8G61|1|L5|G|4338
8G61|1|L5|A|4339
8G61|1|L5|U|4340
8G61|1|L5|C|4341
8G61|1|L5|C|4342
*
8G61|1|L5|OMG|4370
8G61|1|L5|G|4371
8G61|1|L5|U|4372
8G61|1|L5|G|4373
8G61|1|L5|U|4374
8G61|1|L5|C|4375
8G61|1|L5|A|4376
8G61|1|L5|G|4377
8G61|1|L5|A|4378
8G61|1|L5|A|4379
8G61|1|L5|A|4380
8G61|1|L5|A|4381

Current chains

Chain L5
28S rRNA

Nearby chains

Chain 5A
eIF5A1
Chain LA
uL2
Chain LN
60S ribosomal protein L15
Chain LQ
60S ribosomal protein L18
Chain LT
60S ribosomal protein L21
Chain La
60S ribosomal protein L27a
Chain Lb
60S ribosomal protein L29
Chain Lo
60S ribosomal protein L36a

Coloring options:

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