J6_8GHU_001
3D structure
- PDB id
- 8GHU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Methyltransferase RmtC bound to the 30S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CGAUG*CCGCCUG*CAAAUGAAUU*ACACAGCCC(ZIV)UCACACCAU*GGGGUGAAGUCGUAACAAGGUA*UG
- Length
- 65 nucleotides
- Bulged bases
- 8GHU|1|a|G|818, 8GHU|1|a|U|820, 8GHU|1|a|C|1397, 8GHU|1|a|A|1398, 8GHU|1|a|ZIV|1405, 8GHU|1|a|U|1495, 8GHU|1|a|A|1499, 8GHU|1|a|A|1503, 8GHU|1|a|G|1504, 8GHU|1|a|G|1505
- QA status
- Modified nucleotides: ZIV
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8GHU|1|a|C|817
8GHU|1|a|G|818
8GHU|1|a|A|819
8GHU|1|a|U|820
8GHU|1|a|G|821
*
8GHU|1|a|C|879
8GHU|1|a|C|880
8GHU|1|a|G|881
8GHU|1|a|C|882
8GHU|1|a|C|883
8GHU|1|a|U|884
8GHU|1|a|G|885
*
8GHU|1|a|C|912
8GHU|1|a|A|913
8GHU|1|a|A|914
8GHU|1|a|A|915
8GHU|1|a|U|916
8GHU|1|a|G|917
8GHU|1|a|A|918
8GHU|1|a|A|919
8GHU|1|a|U|920
8GHU|1|a|U|921
*
8GHU|1|a|A|1396
8GHU|1|a|C|1397
8GHU|1|a|A|1398
8GHU|1|a|C|1399
8GHU|1|a|A|1400
8GHU|1|a|G|1401
8GHU|1|a|C|1402
8GHU|1|a|C|1403
8GHU|1|a|C|1404
8GHU|1|a|ZIV|1405
8GHU|1|a|U|1406
8GHU|1|a|C|1407
8GHU|1|a|A|1408
8GHU|1|a|C|1409
8GHU|1|a|A|1410
8GHU|1|a|C|1411
8GHU|1|a|C|1412
8GHU|1|a|A|1413
8GHU|1|a|U|1414
*
8GHU|1|a|G|1486
8GHU|1|a|G|1487
8GHU|1|a|G|1488
8GHU|1|a|G|1489
8GHU|1|a|U|1490
8GHU|1|a|G|1491
8GHU|1|a|A|1492
8GHU|1|a|A|1493
8GHU|1|a|G|1494
8GHU|1|a|U|1495
8GHU|1|a|C|1496
8GHU|1|a|G|1497
8GHU|1|a|U|1498
8GHU|1|a|A|1499
8GHU|1|a|A|1500
8GHU|1|a|C|1501
8GHU|1|a|A|1502
8GHU|1|a|A|1503
8GHU|1|a|G|1504
8GHU|1|a|G|1505
8GHU|1|a|U|1506
8GHU|1|a|A|1507
*
8GHU|1|a|U|1528
8GHU|1|a|G|1529
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain A
- 16S rRNA (guanine(1405)-N(7))-methyltransferase
- Chain e
- 30S ribosomal protein S5
- Chain h
- 30S ribosomal protein S8
- Chain l
- 30S ribosomal protein S12
- Chain q
- 30S ribosomal protein S17
Coloring options: