J6_8HFR_001
3D structure
- PDB id
- 8HFR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NPC-trapped pre-60S particle
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.64 Å
Loop
- Sequence
- GAGUAC*GGAAAAGAAAC*GGAUU*AAAAG*CUAAAUAUUGG*CAUC
- Length
- 42 nucleotides
- Bulged bases
- 8HFR|1|1e|A|67, 8HFR|1|1e|U|329, 8HFR|1|3n|U|34
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8HFR|1|1e|G|22
8HFR|1|1e|A|23
8HFR|1|1e|G|24
8HFR|1|1e|U|25
8HFR|1|1e|A|26
8HFR|1|1e|C|27
*
8HFR|1|1e|G|58
8HFR|1|1e|G|59
8HFR|1|1e|A|60
8HFR|1|1e|A|61
8HFR|1|1e|A|62
8HFR|1|1e|A|63
8HFR|1|1e|G|64
8HFR|1|1e|A|65
8HFR|1|1e|A|66
8HFR|1|1e|A|67
8HFR|1|1e|C|68
*
8HFR|1|1e|G|75
8HFR|1|1e|G|76
8HFR|1|1e|A|77
8HFR|1|1e|U|78
8HFR|1|1e|U|79
*
8HFR|1|1e|A|106
8HFR|1|1e|A|107
8HFR|1|1e|A|108
8HFR|1|1e|A|109
8HFR|1|1e|G|110
*
8HFR|1|1e|C|321
8HFR|1|1e|U|322
8HFR|1|1e|A|323
8HFR|1|1e|A|324
8HFR|1|1e|A|325
8HFR|1|1e|U|326
8HFR|1|1e|A|327
8HFR|1|1e|U|328
8HFR|1|1e|U|329
8HFR|1|1e|G|330
8HFR|1|1e|G|331
*
8HFR|1|3n|C|32
8HFR|1|3n|A|33
8HFR|1|3n|U|34
8HFR|1|3n|C|35
Current chains
- Chain 1e
- 25S ribosomal RNA
- Chain 3n
- 5.8S ribosomal RNA
Nearby chains
- Chain DO
- 60S ribosomal protein L4-A
- Chain LL
- 60S ribosomal protein L13-A
- Chain No
- 60S ribosomal protein L15-A
- Chain h1
- 60S ribosomal protein L35-A
- Chain ia
- 60S ribosomal protein L36-A
- Chain jh
- 60S ribosomal protein L37-A
Coloring options: