J6_8HL2_001

3D structure

PDB id

8HL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

AC*GGAAC*GGAAAAGAAAU*AGAUC*GACAG*CUAAAUAU

Length

36 nucleotides

Bulged bases

8HL2|1|A23S|A|202

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8HL2|1|A23S|A|35
8HL2|1|A23S|C|36
*
8HL2|1|A23S|G|158
8HL2|1|A23S|G|159
8HL2|1|A23S|A|160
8HL2|1|A23S|A|161
8HL2|1|A23S|C|162
*
8HL2|1|A23S|G|193
8HL2|1|A23S|G|194
8HL2|1|A23S|A|195
8HL2|1|A23S|A|196
8HL2|1|A23S|A|197
8HL2|1|A23S|A|198
8HL2|1|A23S|G|199
8HL2|1|A23S|A|200
8HL2|1|A23S|A|201
8HL2|1|A23S|A|202
8HL2|1|A23S|U|203
*
8HL2|1|A23S|A|210
8HL2|1|A23S|G|211
8HL2|1|A23S|A|212
8HL2|1|A23S|U|213
8HL2|1|A23S|C|214
*
8HL2|1|A23S|G|241
8HL2|1|A23S|A|242
8HL2|1|A23S|C|243
8HL2|1|A23S|A|244
8HL2|1|A23S|G|245
*
8HL2|1|A23S|C|470
8HL2|1|A23S|U|471
8HL2|1|A23S|A|472
8HL2|1|A23S|A|473
8HL2|1|A23S|A|474
8HL2|1|A23S|U|475
8HL2|1|A23S|A|476
8HL2|1|A23S|U|477

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain L15E

50S ribosomal protein L15e

Chain L37E

50S ribosomal protein L37e