J6_8IP8_001
3D structure
- PDB id
- 8IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Wheat 80S ribosome stalled on AUG-Stop boron dependently
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GGACUAC*GAGGAGAAGAAAC*GGAUU*AGCAG*CUAAAUACAGG*CAUC
- Length
- 45 nucleotides
- Bulged bases
- 8IP8|1|RB|A|66, 8IP8|1|RB|A|327, 8IP8|1|SB|U|34
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8IP8|1|RB|G|21
8IP8|1|RB|G|22
8IP8|1|RB|A|23
8IP8|1|RB|C|24
8IP8|1|RB|U|25
8IP8|1|RB|A|26
8IP8|1|RB|C|27
*
8IP8|1|RB|G|55
8IP8|1|RB|A|56
8IP8|1|RB|G|57
8IP8|1|RB|G|58
8IP8|1|RB|A|59
8IP8|1|RB|G|60
8IP8|1|RB|A|61
8IP8|1|RB|A|62
8IP8|1|RB|G|63
8IP8|1|RB|A|64
8IP8|1|RB|A|65
8IP8|1|RB|A|66
8IP8|1|RB|C|67
*
8IP8|1|RB|G|74
8IP8|1|RB|G|75
8IP8|1|RB|A|76
8IP8|1|RB|U|77
8IP8|1|RB|U|78
*
8IP8|1|RB|A|105
8IP8|1|RB|G|106
8IP8|1|RB|C|107
8IP8|1|RB|A|108
8IP8|1|RB|G|109
*
8IP8|1|RB|C|319
8IP8|1|RB|U|320
8IP8|1|RB|A|321
8IP8|1|RB|A|322
8IP8|1|RB|A|323
8IP8|1|RB|U|324
8IP8|1|RB|A|325
8IP8|1|RB|C|326
8IP8|1|RB|A|327
8IP8|1|RB|G|328
8IP8|1|RB|G|329
*
8IP8|1|SB|C|32
8IP8|1|SB|A|33
8IP8|1|SB|U|34
8IP8|1|SB|C|35
Current chains
- Chain RB
- 60S ribosomal RNA
- Chain SB
- 5.8S ribosomal RNA
Nearby chains
- Chain AB
- 60S ribosomal protein eL36
- Chain BB
- 60S ribosomal protein uL29
- Chain EB
- 60S ribosomal protein uL4
- Chain HA
- 60S ribosomal protein eL15
- Chain KB
- 60S ribosomal protein eL13
- Chain UA
- 60S ribosomal protein eL37
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