J6_8IP8_002
3D structure
- PDB id
- 8IP8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Wheat 80S ribosome stalled on AUG-Stop boron dependently
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UUGA*UUUGG*CCAA*UGUC*GCCUAUCGAUCC*GGUGUCAGAAAA
- Length
- 41 nucleotides
- Bulged bases
- 8IP8|1|RB|G|2411, 8IP8|1|RB|C|2623, 8IP8|1|RB|C|2757, 8IP8|1|RB|A|2796, 8IP8|1|RB|A|2798, 8IP8|1|RB|A|2799
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8IP8|1|RB|U|2409
8IP8|1|RB|U|2410
8IP8|1|RB|G|2411
8IP8|1|RB|A|2412
*
8IP8|1|RB|U|2608
8IP8|1|RB|U|2609
8IP8|1|RB|U|2610
8IP8|1|RB|G|2611
8IP8|1|RB|G|2612
*
8IP8|1|RB|C|2622
8IP8|1|RB|C|2623
8IP8|1|RB|A|2624
8IP8|1|RB|A|2625
*
8IP8|1|RB|U|2647
8IP8|1|RB|G|2648
8IP8|1|RB|U|2649
8IP8|1|RB|C|2650
*
8IP8|1|RB|G|2751
8IP8|1|RB|C|2752
8IP8|1|RB|C|2753
8IP8|1|RB|U|2754
8IP8|1|RB|A|2755
8IP8|1|RB|U|2756
8IP8|1|RB|C|2757
8IP8|1|RB|G|2758
8IP8|1|RB|A|2759
8IP8|1|RB|U|2760
8IP8|1|RB|C|2761
8IP8|1|RB|C|2762
*
8IP8|1|RB|G|2790
8IP8|1|RB|G|2791
8IP8|1|RB|U|2792
8IP8|1|RB|G|2793
8IP8|1|RB|U|2794
8IP8|1|RB|C|2795
8IP8|1|RB|A|2796
8IP8|1|RB|G|2797
8IP8|1|RB|A|2798
8IP8|1|RB|A|2799
8IP8|1|RB|A|2800
8IP8|1|RB|A|2801
Current chains
- Chain RB
- 60S ribosomal RNA
Nearby chains
- Chain BA
- 60S ribosomal protein eL21
- Chain DA
- 60S ribosomal protein uL2
- Chain HA
- 60S ribosomal protein eL15
- Chain HB
- 60S ribosomal protein uL16
- Chain IA
- 60S ribosomal protein uL15
- Chain JA
- 60S ribosomal protein eL18
- Chain OB
- 60S ribosomal protein eL29
- Chain WA
- 60S ribosomal protein eL42
- Chain dl
- CCA end of E-tRNA
Coloring options: