J6_8IPX_002

3D structure

PDB id

8IPX (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State C'

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

CGAG*CGCAA*UGAAG*CGAG*CGG*CACGAG

Length

27 nucleotides

Bulged bases

8IPX|1|2|C|1501

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IPX|1|2|C|1352
8IPX|1|2|G|1353
8IPX|1|2|A|1354
8IPX|1|2|G|1355
*
8IPX|1|2|C|1384
8IPX|1|2|G|1385
8IPX|1|2|C|1386
8IPX|1|2|A|1387
8IPX|1|2|A|1388
*
8IPX|1|2|U|1395
8IPX|1|2|G|1396
8IPX|1|2|A|1397
8IPX|1|2|A|1398
8IPX|1|2|G|1399
*
8IPX|1|2|C|1418
8IPX|1|2|G|1419
8IPX|1|2|A|1420
8IPX|1|2|G|1421
*
8IPX|1|2|C|1464
8IPX|1|2|G|1465
8IPX|1|2|G|1466
*
8IPX|1|2|C|1499
8IPX|1|2|A|1500
8IPX|1|2|C|1501
8IPX|1|2|G|1502
8IPX|1|2|A|1503
8IPX|1|2|G|1504

Current chains

Chain 2

28S rRNA

Nearby chains

Chain D

60S ribosomal protein L4

Chain K

60S ribosomal protein L36

Chain L

60S ribosomal protein L27a

Chain Q

60S ribosomal protein L13

Chain Z

60S ribosomal protein L18