J6_8OIN_003
3D structure
- PDB id
- 8OIN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 55S mammalian mitochondrial ribosome with mtRF1 and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- UUUA*UUCG*CU*AGU*ACUUAUUGAUCC*GAUCAACGGAACAA
- Length
- 39 nucleotides
- Bulged bases
- 8OIN|1|B8|U|1071, 8OIN|1|B8|C|1226, 8OIN|1|B8|G|1252, 8OIN|1|B8|A|1254
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8OIN|1|B8|U|1069
8OIN|1|B8|U|1070
8OIN|1|B8|U|1071
8OIN|1|B8|A|1072
*
8OIN|1|B8|U|1143
8OIN|1|B8|U|1144
8OIN|1|B8|C|1145
8OIN|1|B8|G|1146
*
8OIN|1|B8|C|1158
8OIN|1|B8|U|1159
*
8OIN|1|B8|A|1181
8OIN|1|B8|G|1182
8OIN|1|B8|U|1183
*
8OIN|1|B8|A|1225
8OIN|1|B8|C|1226
8OIN|1|B8|U|1227
8OIN|1|B8|U|1228
8OIN|1|B8|A|1229
8OIN|1|B8|U|1230
8OIN|1|B8|U|1231
8OIN|1|B8|G|1232
8OIN|1|B8|A|1233
8OIN|1|B8|U|1234
8OIN|1|B8|C|1235
8OIN|1|B8|C|1236
*
8OIN|1|B8|G|1245
8OIN|1|B8|A|1246
8OIN|1|B8|U|1247
8OIN|1|B8|C|1248
8OIN|1|B8|A|1249
8OIN|1|B8|A|1250
8OIN|1|B8|C|1251
8OIN|1|B8|G|1252
8OIN|1|B8|G|1253
8OIN|1|B8|A|1254
8OIN|1|B8|A|1255
8OIN|1|B8|C|1256
8OIN|1|B8|A|1257
8OIN|1|B8|A|1258
Current chains
- Chain B8
- 16S rRNA
Nearby chains
- Chain B7
- E-site tRNA
- Chain BD
- Mitochondrial ribosomal protein L27
- Chain BE
- Mitochondrial ribosomal protein L28
- Chain BI
- bL33m
- Chain BK
- Mitochondrial ribosomal protein L35
- Chain BL
- uL2m
- Chain BT
- 39S ribosomal protein L15, mitochondrial
Coloring options: