J6_8OIR_002
3D structure
- PDB id
- 8OIR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 55S human mitochondrial ribosome with mtRF1 and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UUUA*UUCG*CU*AGCA*UCAAUUGAUCC*GACCAACGGAACAA
- Length
- 39 nucleotides
- Bulged bases
- 8OIR|1|B8|U|1069, 8OIR|1|B8|U|1225, 8OIR|1|B8|G|1246, 8OIR|1|B8|A|1248
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8OIR|1|B8|U|1067
8OIR|1|B8|U|1068
8OIR|1|B8|U|1069
8OIR|1|B8|A|1070
*
8OIR|1|B8|U|1137
8OIR|1|B8|U|1138
8OIR|1|B8|C|1139
8OIR|1|B8|G|1140
*
8OIR|1|B8|C|1152
8OIR|1|B8|U|1153
*
8OIR|1|B8|A|1175
8OIR|1|B8|G|1176
8OIR|1|B8|C|1177
8OIR|1|B8|A|1178
*
8OIR|1|B8|U|1220
8OIR|1|B8|C|1221
8OIR|1|B8|A|1222
8OIR|1|B8|A|1223
8OIR|1|B8|U|1224
8OIR|1|B8|U|1225
8OIR|1|B8|G|1226
8OIR|1|B8|A|1227
8OIR|1|B8|U|1228
8OIR|1|B8|C|1229
8OIR|1|B8|C|1230
*
8OIR|1|B8|G|1239
8OIR|1|B8|A|1240
8OIR|1|B8|C|1241
8OIR|1|B8|C|1242
8OIR|1|B8|A|1243
8OIR|1|B8|A|1244
8OIR|1|B8|C|1245
8OIR|1|B8|G|1246
8OIR|1|B8|G|1247
8OIR|1|B8|A|1248
8OIR|1|B8|A|1249
8OIR|1|B8|C|1250
8OIR|1|B8|A|1251
8OIR|1|B8|A|1252
Current chains
- Chain B8
- 16S rRNA
Nearby chains
- Chain B7
- E-site tRNA
- Chain BD
- 39S ribosomal protein L27, mitochondrial
- Chain BE
- 39S ribosomal protein L28, mitochondrial
- Chain BI
- 39S ribosomal protein L33, mitochondrial
- Chain BK
- 39S ribosomal protein L35, mitochondrial
- Chain BL
- 39S ribosomal protein L2, mitochondrial
- Chain BT
- 39S ribosomal protein L15, mitochondrial
Coloring options: