J6_8OVE_001
3D structure
- PDB id
- 8OVE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- GACCAC*GGAAAAGAAAA*UGAUU*AUUCAA*UUAAAUAUAGA*UC
- Length
- 41 nucleotides
- Bulged bases
- 8OVE|1|BA|A|69, 8OVE|1|BA|C|112, 8OVE|1|BA|A|397, 8OVE|1|BA|G|398
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8OVE|1|BA|G|24
8OVE|1|BA|A|25
8OVE|1|BA|C|26
8OVE|1|BA|C|27
8OVE|1|BA|A|28
8OVE|1|BA|C|29
*
8OVE|1|BA|G|60
8OVE|1|BA|G|61
8OVE|1|BA|A|62
8OVE|1|BA|A|63
8OVE|1|BA|A|64
8OVE|1|BA|A|65
8OVE|1|BA|G|66
8OVE|1|BA|A|67
8OVE|1|BA|A|68
8OVE|1|BA|A|69
8OVE|1|BA|A|70
*
8OVE|1|BA|U|77
8OVE|1|BA|G|78
8OVE|1|BA|A|79
8OVE|1|BA|U|80
8OVE|1|BA|U|81
*
8OVE|1|BA|A|109
8OVE|1|BA|U|110
8OVE|1|BA|U|111
8OVE|1|BA|C|112
8OVE|1|BA|A|113
8OVE|1|BA|A|114
*
8OVE|1|BA|U|389
8OVE|1|BA|U|390
8OVE|1|BA|A|391
8OVE|1|BA|A|392
8OVE|1|BA|A|393
8OVE|1|BA|U|394
8OVE|1|BA|A|395
8OVE|1|BA|U|396
8OVE|1|BA|A|397
8OVE|1|BA|G|398
8OVE|1|BA|A|399
*
8OVE|1|BC|U|34
8OVE|1|BC|C|35
Current chains
- Chain BA
- LUS_alpha rRNA
- Chain BC
- 5.8S rRNA
Nearby chains
- Chain BN
- 60S ribosomal protein L13
- Chain BQ
- Ribosomal protein L15
- Chain Bk
- 60S ribosomal protein L35, putative
- Chain Bm
- Ribosomal protein L36, putative
- Chain Bn
- Ribosomal protein L37
- Chain Br
- 60S ribosomal protein L4
Coloring options: