J6_8OVE_002
3D structure
- PDB id
- 8OVE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- CAAG*CGUAC*GGAG*CCGUGGCG*CCAACAC*GCGCGAG
- Length
- 35 nucleotides
- Bulged bases
- 8OVE|1|BA|U|838, 8OVE|1|BA|C|904, 8OVE|1|BA|G|905
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8OVE|1|BA|C|772
8OVE|1|BA|A|773
8OVE|1|BA|A|774
8OVE|1|BA|G|775
*
8OVE|1|BA|C|806
8OVE|1|BA|G|807
8OVE|1|BA|U|808
8OVE|1|BA|A|809
8OVE|1|BA|C|810
*
8OVE|1|BA|G|817
8OVE|1|BA|G|818
8OVE|1|BA|A|819
8OVE|1|BA|G|820
*
8OVE|1|BA|C|835
8OVE|1|BA|C|836
8OVE|1|BA|G|837
8OVE|1|BA|U|838
8OVE|1|BA|G|839
8OVE|1|BA|G|840
8OVE|1|BA|C|841
8OVE|1|BA|G|842
*
8OVE|1|BA|C|872
8OVE|1|BA|C|873
8OVE|1|BA|A|874
8OVE|1|BA|A|875
8OVE|1|BA|C|876
8OVE|1|BA|A|877
8OVE|1|BA|C|878
*
8OVE|1|BA|G|901
8OVE|1|BA|C|902
8OVE|1|BA|G|903
8OVE|1|BA|C|904
8OVE|1|BA|G|905
8OVE|1|BA|A|906
8OVE|1|BA|G|907
Current chains
- Chain BA
- LUS_alpha rRNA
Nearby chains
- Chain BB
- Large subunit ribosomal RNA; LSU rRNA
- Chain BI
- 60S ribosomal protein L18
- Chain BN
- 60S ribosomal protein L13
- Chain BU
- 60S ribosomal protein L21E, putative
- Chain Bb
- 60S ribosomal protein L27a
- Chain Bd
- 60S ribosomal protein L29
- Chain Bm
- Ribosomal protein L36, putative
- Chain Br
- 60S ribosomal protein L4
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