J6_8P4V_003
3D structure
- PDB id
- 8P4V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S yeast ribosome in complex with HaterumaimideQ
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.16 Å
Loop
- Sequence
- GAGUAC*GGAAAAGAAAC*GGAUU*AAAAG*CUAAAUAUUGG*CAUC
- Length
- 42 nucleotides
- Bulged bases
- 8P4V|1|AR|A|67, 8P4V|1|AR|U|329, 8P4V|1|AT|U|34
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8P4V|1|AR|G|22
8P4V|1|AR|A|23
8P4V|1|AR|G|24
8P4V|1|AR|U|25
8P4V|1|AR|A|26
8P4V|1|AR|C|27
*
8P4V|1|AR|G|58
8P4V|1|AR|G|59
8P4V|1|AR|A|60
8P4V|1|AR|A|61
8P4V|1|AR|A|62
8P4V|1|AR|A|63
8P4V|1|AR|G|64
8P4V|1|AR|A|65
8P4V|1|AR|A|66
8P4V|1|AR|A|67
8P4V|1|AR|C|68
*
8P4V|1|AR|G|75
8P4V|1|AR|G|76
8P4V|1|AR|A|77
8P4V|1|AR|U|78
8P4V|1|AR|U|79
*
8P4V|1|AR|A|106
8P4V|1|AR|A|107
8P4V|1|AR|A|108
8P4V|1|AR|A|109
8P4V|1|AR|G|110
*
8P4V|1|AR|C|321
8P4V|1|AR|U|322
8P4V|1|AR|A|323
8P4V|1|AR|A|324
8P4V|1|AR|A|325
8P4V|1|AR|U|326
8P4V|1|AR|A|327
8P4V|1|AR|U|328
8P4V|1|AR|U|329
8P4V|1|AR|G|330
8P4V|1|AR|G|331
*
8P4V|1|AT|C|32
8P4V|1|AT|A|33
8P4V|1|AT|U|34
8P4V|1|AT|C|35
Current chains
- Chain AR
- 25S ribosomal RNA
- Chain AT
- 5.8S ribosomal RNA
Nearby chains
- Chain CF
- 60S ribosomal protein L4-A
- Chain CN
- 60S ribosomal protein L13-A
- Chain CP
- 60S ribosomal protein L15-A
- Chain DJ
- 60S ribosomal protein L35-A
- Chain DK
- 60S ribosomal protein L36-A
- Chain DL
- 60S ribosomal protein L37-A
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