3D structure

PDB id
8P4V (explore in PDB, NAKB, or RNA 3D Hub)
Description
80S yeast ribosome in complex with HaterumaimideQ
Experimental method
X-RAY DIFFRACTION
Resolution
3.16 Å

Loop

Sequence
GAGUAC*GGAAAAGAAAC*GGAUU*AAAAG*CUAAAUAUUGG*CAUC
Length
42 nucleotides
Bulged bases
8P4V|1|AR|A|67, 8P4V|1|AR|U|329, 8P4V|1|AT|U|34
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8P4V|1|AR|G|22
8P4V|1|AR|A|23
8P4V|1|AR|G|24
8P4V|1|AR|U|25
8P4V|1|AR|A|26
8P4V|1|AR|C|27
*
8P4V|1|AR|G|58
8P4V|1|AR|G|59
8P4V|1|AR|A|60
8P4V|1|AR|A|61
8P4V|1|AR|A|62
8P4V|1|AR|A|63
8P4V|1|AR|G|64
8P4V|1|AR|A|65
8P4V|1|AR|A|66
8P4V|1|AR|A|67
8P4V|1|AR|C|68
*
8P4V|1|AR|G|75
8P4V|1|AR|G|76
8P4V|1|AR|A|77
8P4V|1|AR|U|78
8P4V|1|AR|U|79
*
8P4V|1|AR|A|106
8P4V|1|AR|A|107
8P4V|1|AR|A|108
8P4V|1|AR|A|109
8P4V|1|AR|G|110
*
8P4V|1|AR|C|321
8P4V|1|AR|U|322
8P4V|1|AR|A|323
8P4V|1|AR|A|324
8P4V|1|AR|A|325
8P4V|1|AR|U|326
8P4V|1|AR|A|327
8P4V|1|AR|U|328
8P4V|1|AR|U|329
8P4V|1|AR|G|330
8P4V|1|AR|G|331
*
8P4V|1|AT|C|32
8P4V|1|AT|A|33
8P4V|1|AT|U|34
8P4V|1|AT|C|35

Current chains

Chain AR
25S ribosomal RNA
Chain AT
5.8S ribosomal RNA

Nearby chains

Chain CF
60S ribosomal protein L4-A
Chain CN
60S ribosomal protein L13-A
Chain CP
60S ribosomal protein L15-A
Chain DJ
60S ribosomal protein L35-A
Chain DK
60S ribosomal protein L36-A
Chain DL
60S ribosomal protein L37-A

Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 1.9312 s