Loop J6_8PV4

3D structure

PDB id: 8PV4 (explore in PDB, NAKB, or RNA 3D Hub)
Description: Chaetomium thermophilum pre-60S State 2 - pre-5S rotation with Rix1 complex - composite structure
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.9 Å

Loop

Sequence: GAGGAC*GGAAAAGAAAC*GGAUU*AACAG*CUAAAUACCGG*CAUC
Length: 42 nucleotides
Bulged bases: 8PV4|1|C1|A|68, 8PV4|1|C1|C|322, 8PV4|1|C2|U|34
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

8PV4|1|C1|G|23
8PV4|1|C1|A|24
8PV4|1|C1|G|25
8PV4|1|C1|G|26
8PV4|1|C1|A|27
8PV4|1|C1|C|28
*
8PV4|1|C1|G|59
8PV4|1|C1|G|60
8PV4|1|C1|A|61
8PV4|1|C1|A|62
8PV4|1|C1|A|63
8PV4|1|C1|A|64
8PV4|1|C1|G|65
8PV4|1|C1|A|66
8PV4|1|C1|A|67
8PV4|1|C1|A|68
8PV4|1|C1|C|69
*
8PV4|1|C1|G|76
8PV4|1|C1|G|77
8PV4|1|C1|A|78
8PV4|1|C1|U|79
8PV4|1|C1|U|80
*
8PV4|1|C1|A|107
8PV4|1|C1|A|108
8PV4|1|C1|C|109
8PV4|1|C1|A|110
8PV4|1|C1|G|111
*
8PV4|1|C1|C|314
8PV4|1|C1|U|315
8PV4|1|C1|A|316
8PV4|1|C1|A|317
8PV4|1|C1|A|318
8PV4|1|C1|U|319
8PV4|1|C1|A|320
8PV4|1|C1|C|321
8PV4|1|C1|C|322
8PV4|1|C1|G|323
8PV4|1|C1|G|324
*
8PV4|1|C2|C|32
8PV4|1|C2|A|33
8PV4|1|C2|U|34
8PV4|1|C2|C|35

Current chains

Chain C1: 26S rRNA
Chain C2: 5.8S rRNA

Nearby chains

Chain LC: 60S ribosomal protein L4-like protein
Chain LL: 60S ribosomal protein L13
Chain LN: Ribosomal protein L15
Chain Lh: dolichyl-diphosphooligosaccharide--protein glycotransferase
Chain Li: 60S ribosomal protein L36
Chain Lj: Ribosomal protein L37

J6_8PV4_001