J6_8QU5_001
3D structure
- PDB id
- 8QU5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mt-LSU assembly intermediate in GTPBP8 knock-out cells, state 2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.42 Å
Loop
- Sequence
- AGAUAG*CAA*UUAG*CACUA*UUGUAG*CACACCCAAU
- Length
- 34 nucleotides
- Bulged bases
- 8QU5|1|A|A|2097, 8QU5|1|A|G|2140, 8QU5|1|A|C|2262
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8QU5|1|A|A|2027
8QU5|1|A|G|2028
8QU5|1|A|A|2029
8QU5|1|A|U|2030
8QU5|1|A|A|2031
8QU5|1|A|G|2032
*
8QU5|1|A|C|2043
8QU5|1|A|A|2044
8QU5|1|A|A|2045
*
8QU5|1|A|U|2095
8QU5|1|A|U|2096
8QU5|1|A|A|2097
8QU5|1|A|G|2098
*
8QU5|1|A|C|2123
8QU5|1|A|A|2124
8QU5|1|A|C|2125
8QU5|1|A|U|2126
8QU5|1|A|A|2127
*
8QU5|1|A|U|2138
8QU5|1|A|U|2139
8QU5|1|A|G|2140
8QU5|1|A|U|2141
8QU5|1|A|A|2142
8QU5|1|A|G|2143
*
8QU5|1|A|C|2257
8QU5|1|A|A|2258
8QU5|1|A|C|2259
8QU5|1|A|A|2260
8QU5|1|A|C|2261
8QU5|1|A|C|2262
8QU5|1|A|C|2263
8QU5|1|A|A|2264
8QU5|1|A|A|2265
8QU5|1|A|U|2266
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain 3
- 39S ribosomal protein L35, mitochondrial
- Chain I
- 39S ribosomal protein L10, mitochondrial
- Chain M
- 39S ribosomal protein L15, mitochondrial
- Chain N
- 39S ribosomal protein L16, mitochondrial
- Chain R
- 39S ribosomal protein L20, mitochondrial
- Chain S
- 39S ribosomal protein L21, mitochondrial
- Chain W
- 39S ribosomal protein L27, mitochondrial
- Chain Z
- 39S ribosomal protein L30, mitochondrial
- Chain i
- 39S ribosomal protein L51, mitochondrial
- Chain j
- 39S ribosomal protein L52, mitochondrial
- Chain o
- Ribosomal protein 63, mitochondrial
Coloring options: