J6_8QYX_001
3D structure
- PDB id
- 8QYX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human 60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.78 Å
Loop
- Sequence
- GGCGAC*GGAGAAGAAAC*GGAUU*AAGAG*CUAAAUAC*GUC
- Length
- 38 nucleotides
- Bulged bases
- 8QYX|1|A2|A|66, 8QYX|1|C2|U|34
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8QYX|1|A2|G|21
8QYX|1|A2|G|22
8QYX|1|A2|C|23
8QYX|1|A2|G|24
8QYX|1|A2|A|25
8QYX|1|A2|C|26
*
8QYX|1|A2|G|57
8QYX|1|A2|G|58
8QYX|1|A2|A|59
8QYX|1|A2|G|60
8QYX|1|A2|A|61
8QYX|1|A2|A|62
8QYX|1|A2|G|63
8QYX|1|A2|A|64
8QYX|1|A2|A|65
8QYX|1|A2|A|66
8QYX|1|A2|C|67
*
8QYX|1|A2|G|74
8QYX|1|A2|G|75
8QYX|1|A2|A|76
8QYX|1|A2|U|77
8QYX|1|A2|U|78
*
8QYX|1|A2|A|105
8QYX|1|A2|A|106
8QYX|1|A2|G|107
8QYX|1|A2|A|108
8QYX|1|A2|G|109
*
8QYX|1|A2|C|332
8QYX|1|A2|U|333
8QYX|1|A2|A|334
8QYX|1|A2|A|335
8QYX|1|A2|A|336
8QYX|1|A2|U|337
8QYX|1|A2|A|338
8QYX|1|A2|C|339
*
8QYX|1|C2|G|33
8QYX|1|C2|U|34
8QYX|1|C2|C|35
Current chains
- Chain A2
- 28S rRNA
- Chain C2
- 5.8S rRNA
Nearby chains
- Chain F1
- 60S ribosomal protein L13
- Chain F2
- 60S ribosomal protein L4
- Chain H1
- 60S ribosomal protein L15
- Chain b1
- 60S ribosomal protein L35
- Chain c1
- 60S ribosomal protein L36
- Chain d1
- 60S ribosomal protein L37
Coloring options: