3D structure

PDB id
8QYX (explore in PDB, NAKB, or RNA 3D Hub)
Description
Human 60S ribosomal subunit
Experimental method
ELECTRON MICROSCOPY
Resolution
1.78 Å

Loop

Sequence
CGAG*CGCAA*UGAAG*CGAG*CGG*CACGAG
Length
27 nucleotides
Bulged bases
8QYX|1|A2|C|1501, 8QYX|1|A2|G|1502
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8QYX|1|A2|C|1352
8QYX|1|A2|G|1353
8QYX|1|A2|A|1354
8QYX|1|A2|G|1355
*
8QYX|1|A2|C|1384
8QYX|1|A2|G|1385
8QYX|1|A2|C|1386
8QYX|1|A2|A|1387
8QYX|1|A2|A|1388
*
8QYX|1|A2|U|1395
8QYX|1|A2|G|1396
8QYX|1|A2|A|1397
8QYX|1|A2|A|1398
8QYX|1|A2|G|1399
*
8QYX|1|A2|C|1418
8QYX|1|A2|G|1419
8QYX|1|A2|A|1420
8QYX|1|A2|G|1421
*
8QYX|1|A2|C|1464
8QYX|1|A2|G|1465
8QYX|1|A2|G|1466
*
8QYX|1|A2|C|1499
8QYX|1|A2|A|1500
8QYX|1|A2|C|1501
8QYX|1|A2|G|1502
8QYX|1|A2|A|1503
8QYX|1|A2|G|1504

Current chains

Chain A2
28S rRNA

Nearby chains

Chain F1
60S ribosomal protein L13
Chain F2
60S ribosomal protein L4
Chain K1
60S ribosomal protein L18
Chain N1
60S ribosomal protein L21
Chain U1
Large ribosomal subunit protein uL15
Chain V1
60S ribosomal protein L29
Chain c1
60S ribosomal protein L36

Coloring options:

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