J6_8RDV_001

3D structure

PDB id

8RDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GG*CGAAC*GGAAAAGACAU*AGAUU*AGAAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

8RDV|1|Z2|A|220

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8RDV|1|Z2|G|52
8RDV|1|Z2|G|53
*
8RDV|1|Z2|C|176
8RDV|1|Z2|G|177
8RDV|1|Z2|A|178
8RDV|1|Z2|A|179
8RDV|1|Z2|C|180
*
8RDV|1|Z2|G|211
8RDV|1|Z2|G|212
8RDV|1|Z2|A|213
8RDV|1|Z2|A|214
8RDV|1|Z2|A|215
8RDV|1|Z2|A|216
8RDV|1|Z2|G|217
8RDV|1|Z2|A|218
8RDV|1|Z2|C|219
8RDV|1|Z2|A|220
8RDV|1|Z2|U|221
*
8RDV|1|Z2|A|228
8RDV|1|Z2|G|229
8RDV|1|Z2|A|230
8RDV|1|Z2|U|231
8RDV|1|Z2|U|232
*
8RDV|1|Z2|A|259
8RDV|1|Z2|G|260
8RDV|1|Z2|A|261
8RDV|1|Z2|A|262
8RDV|1|Z2|G|263
*
8RDV|1|Z2|C|409
8RDV|1|Z2|U|410
8RDV|1|Z2|A|411
8RDV|1|Z2|A|412
8RDV|1|Z2|A|413
8RDV|1|Z2|U|414
8RDV|1|Z2|A|415
8RDV|1|Z2|C|416

Current chains

Chain Z2

23S rRNA

Nearby chains

Chain Ba

Large ribosomal subunit protein bL34