J6_8RDV_002
3D structure
- PDB id
- 8RDV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- UUUA*UUUG*CU*AGUA*UCUUAGUGAUCC*GCUCAACGGAUAAAA
- Length
- 41 nucleotides
- Bulged bases
- 8RDV|1|Z2|U|2062, 8RDV|1|Z2|A|2371, 8RDV|1|Z2|U|2373, 8RDV|1|Z2|G|2411, 8RDV|1|Z2|A|2413, 8RDV|1|Z2|U|2414
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8RDV|1|Z2|U|2060
8RDV|1|Z2|U|2061
8RDV|1|Z2|U|2062
8RDV|1|Z2|A|2063
*
8RDV|1|Z2|U|2226
8RDV|1|Z2|U|2227
8RDV|1|Z2|U|2228
8RDV|1|Z2|G|2229
*
8RDV|1|Z2|C|2241
8RDV|1|Z2|U|2242
*
8RDV|1|Z2|A|2264
8RDV|1|Z2|G|2265
8RDV|1|Z2|U|2266
8RDV|1|Z2|A|2267
*
8RDV|1|Z2|U|2367
8RDV|1|Z2|C|2368
8RDV|1|Z2|U|2369
8RDV|1|Z2|U|2370
8RDV|1|Z2|A|2371
8RDV|1|Z2|G|2372
8RDV|1|Z2|U|2373
8RDV|1|Z2|G|2374
8RDV|1|Z2|A|2375
8RDV|1|Z2|U|2376
8RDV|1|Z2|C|2377
8RDV|1|Z2|C|2378
*
8RDV|1|Z2|G|2404
8RDV|1|Z2|C|2405
8RDV|1|Z2|U|2406
8RDV|1|Z2|C|2407
8RDV|1|Z2|A|2408
8RDV|1|Z2|A|2409
8RDV|1|Z2|C|2410
8RDV|1|Z2|G|2411
8RDV|1|Z2|G|2412
8RDV|1|Z2|A|2413
8RDV|1|Z2|U|2414
8RDV|1|Z2|A|2415
8RDV|1|Z2|A|2416
8RDV|1|Z2|A|2417
8RDV|1|Z2|A|2418
Current chains
- Chain Z2
- 23S rRNA
Nearby chains
- Chain Cl
- Large ribosomal subunit protein uL2
- Chain Kd
- Large ribosomal subunit protein uL15
- Chain VH
- Large ribosomal subunit protein bL27
- Chain WD
- Large ribosomal subunit protein bL28
- Chain bk
- Large ribosomal subunit protein bL33
- Chain dh
- Large ribosomal subunit protein bL35
Coloring options: