3D structure

PDB id
8RJC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1
Experimental method
ELECTRON MICROSCOPY
Resolution
2.90061 Å

Loop

Sequence
GGCGAC*GGAAAAGAAAC*GGAUU*AAGAG*CUAAAUAC*GUC
Length
38 nucleotides
Bulged bases
8RJC|1|K|A|66, 8RJC|1|v|U|34
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8RJC|1|K|G|21
8RJC|1|K|G|22
8RJC|1|K|C|23
8RJC|1|K|G|24
8RJC|1|K|A|25
8RJC|1|K|C|26
*
8RJC|1|K|G|57
8RJC|1|K|G|58
8RJC|1|K|A|59
8RJC|1|K|A|60
8RJC|1|K|A|61
8RJC|1|K|A|62
8RJC|1|K|G|63
8RJC|1|K|A|64
8RJC|1|K|A|65
8RJC|1|K|A|66
8RJC|1|K|C|67
*
8RJC|1|K|G|74
8RJC|1|K|G|75
8RJC|1|K|A|76
8RJC|1|K|U|77
8RJC|1|K|U|78
*
8RJC|1|K|A|105
8RJC|1|K|A|106
8RJC|1|K|G|107
8RJC|1|K|A|108
8RJC|1|K|G|109
*
8RJC|1|K|C|332
8RJC|1|K|U|333
8RJC|1|K|A|334
8RJC|1|K|A|335
8RJC|1|K|A|336
8RJC|1|K|U|337
8RJC|1|K|A|338
8RJC|1|K|C|339
*
8RJC|1|v|G|33
8RJC|1|v|U|34
8RJC|1|v|C|35

Current chains

Chain K
28S rRNA
Chain v
5.8S rRNA

Nearby chains

Chain L
60S ribosomal protein L13
Chain N
Ribosomal protein L15
Chain h
60S ribosomal protein L35
Chain i
60S ribosomal protein L36
Chain j
Ribosomal protein L37

Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 0.4436 s