J6_8RJC_001
3D structure
- PDB id
- 8RJC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.90061 Å
Loop
- Sequence
- GGCGAC*GGAAAAGAAAC*GGAUU*AAGAG*CUAAAUAC*GUC
- Length
- 38 nucleotides
- Bulged bases
- 8RJC|1|K|A|66, 8RJC|1|v|U|34
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8RJC|1|K|G|21
8RJC|1|K|G|22
8RJC|1|K|C|23
8RJC|1|K|G|24
8RJC|1|K|A|25
8RJC|1|K|C|26
*
8RJC|1|K|G|57
8RJC|1|K|G|58
8RJC|1|K|A|59
8RJC|1|K|A|60
8RJC|1|K|A|61
8RJC|1|K|A|62
8RJC|1|K|G|63
8RJC|1|K|A|64
8RJC|1|K|A|65
8RJC|1|K|A|66
8RJC|1|K|C|67
*
8RJC|1|K|G|74
8RJC|1|K|G|75
8RJC|1|K|A|76
8RJC|1|K|U|77
8RJC|1|K|U|78
*
8RJC|1|K|A|105
8RJC|1|K|A|106
8RJC|1|K|G|107
8RJC|1|K|A|108
8RJC|1|K|G|109
*
8RJC|1|K|C|332
8RJC|1|K|U|333
8RJC|1|K|A|334
8RJC|1|K|A|335
8RJC|1|K|A|336
8RJC|1|K|U|337
8RJC|1|K|A|338
8RJC|1|K|C|339
*
8RJC|1|v|G|33
8RJC|1|v|U|34
8RJC|1|v|C|35
Current chains
- Chain K
- 28S rRNA
- Chain v
- 5.8S rRNA
Nearby chains
- Chain L
- 60S ribosomal protein L13
- Chain N
- Ribosomal protein L15
- Chain h
- 60S ribosomal protein L35
- Chain i
- 60S ribosomal protein L36
- Chain j
- Ribosomal protein L37
Coloring options: