3D structure

PDB id
8RJC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1
Experimental method
ELECTRON MICROSCOPY
Resolution
2.90061 Å

Loop

Sequence
CGAG*CGCAA*UGAAG*CGAG*CGG*CACGAG
Length
27 nucleotides
Bulged bases
8RJC|1|K|C|1501, 8RJC|1|K|G|1502
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8RJC|1|K|C|1352
8RJC|1|K|G|1353
8RJC|1|K|A|1354
8RJC|1|K|G|1355
*
8RJC|1|K|C|1384
8RJC|1|K|G|1385
8RJC|1|K|C|1386
8RJC|1|K|A|1387
8RJC|1|K|A|1388
*
8RJC|1|K|U|1395
8RJC|1|K|G|1396
8RJC|1|K|A|1397
8RJC|1|K|A|1398
8RJC|1|K|G|1399
*
8RJC|1|K|C|1418
8RJC|1|K|G|1419
8RJC|1|K|A|1420
8RJC|1|K|G|1421
*
8RJC|1|K|C|1464
8RJC|1|K|G|1465
8RJC|1|K|G|1466
*
8RJC|1|K|C|1499
8RJC|1|K|A|1500
8RJC|1|K|C|1501
8RJC|1|K|G|1502
8RJC|1|K|A|1503
8RJC|1|K|G|1504

Current chains

Chain K
28S rRNA

Nearby chains

Chain C
Large ribosomal subunit protein uL4
Chain L
60S ribosomal protein L13
Chain Q
Ribosomal protein L18
Chain a
60S ribosomal protein L27a
Chain b
60S ribosomal protein L29
Chain i
60S ribosomal protein L36

Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 0.1329 s