J6_8RXH_001
3D structure
- PDB id
- 8RXH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.93 Å
Loop
- Sequence
- GACUAC*GGAAAAGAAAA*UGAUU*AACGAA*UUAAAUACAGA*UC
- Length
- 41 nucleotides
- Bulged bases
- 8RXH|1|L1|A|65, 8RXH|1|L1|G|108, 8RXH|1|L1|A|367, 8RXH|1|L1|G|368
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8RXH|1|L1|G|20
8RXH|1|L1|A|21
8RXH|1|L1|C|22
8RXH|1|L1|U|23
8RXH|1|L1|A|24
8RXH|1|L1|C|25
*
8RXH|1|L1|G|56
8RXH|1|L1|G|57
8RXH|1|L1|A|58
8RXH|1|L1|A|59
8RXH|1|L1|A|60
8RXH|1|L1|A|61
8RXH|1|L1|G|62
8RXH|1|L1|A|63
8RXH|1|L1|A|64
8RXH|1|L1|A|65
8RXH|1|L1|A|66
*
8RXH|1|L1|U|73
8RXH|1|L1|G|74
8RXH|1|L1|A|75
8RXH|1|L1|U|76
8RXH|1|L1|U|77
*
8RXH|1|L1|A|105
8RXH|1|L1|A|106
8RXH|1|L1|C|107
8RXH|1|L1|G|108
8RXH|1|L1|A|109
8RXH|1|L1|A|110
*
8RXH|1|L1|U|359
8RXH|1|L1|U|360
8RXH|1|L1|A|361
8RXH|1|L1|A|362
8RXH|1|L1|A|363
8RXH|1|L1|U|364
8RXH|1|L1|A|365
8RXH|1|L1|C|366
8RXH|1|L1|A|367
8RXH|1|L1|G|368
8RXH|1|L1|A|369
*
8RXH|1|L7|U|34
8RXH|1|L7|C|35
Current chains
- Chain L1
- LSUa_rRNA_chain_1
- Chain L7
- 5.8S_rRNA_chain_7
Nearby chains
- Chain LC
- Putative ribosomal protein L1a
- Chain LI
- Putative 60S ribosomal protein L13
- Chain LM
- Ribosomal protein L15
- Chain La
- Putative 60S ribosomal protein L35
- Chain Li
- Putative 60S Ribosomal protein L36
- Chain Lj
- Ribosomal protein L37
Coloring options: