J6_8RXH_002
3D structure
- PDB id
- 8RXH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.93 Å
Loop
- Sequence
- CAAG*CGUAC*GGAG*CUGUG*CG*UGGAG
- Length
- 25 nucleotides
- Bulged bases
- 8RXH|1|L1|U|771, 8RXH|1|L1|G|835, 8RXH|1|L1|G|836
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8RXH|1|L1|C|707
8RXH|1|L1|A|708
8RXH|1|L1|A|709
8RXH|1|L1|G|710
*
8RXH|1|L1|C|740
8RXH|1|L1|G|741
8RXH|1|L1|U|742
8RXH|1|L1|A|743
8RXH|1|L1|C|744
*
8RXH|1|L1|G|751
8RXH|1|L1|G|752
8RXH|1|L1|A|753
8RXH|1|L1|G|754
*
8RXH|1|L1|C|768
8RXH|1|L1|U|769
8RXH|1|L1|G|770
8RXH|1|L1|U|771
8RXH|1|L1|G|772
*
8RXH|1|L1|C|810
8RXH|1|L1|G|811
*
8RXH|1|L1|U|834
8RXH|1|L1|G|835
8RXH|1|L1|G|836
8RXH|1|L1|A|837
8RXH|1|L1|G|838
Current chains
- Chain L1
- LSUa_rRNA_chain_1
Nearby chains
- Chain L2
- Large subunit ribosomal RNA; LSU rRNA
- Chain LC
- Putative ribosomal protein L1a
- Chain LI
- Putative 60S ribosomal protein L13
- Chain LL
- Putative 60S ribosomal protein L27A/L29
- Chain LP
- 60S ribosomal protein L18
- Chain Lb
- 60S ribosomal protein L29
- Chain Li
- Putative 60S Ribosomal protein L36
Coloring options: