J6_8RXH_004

3D structure

PDB id

8RXH (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

GCAAAAAUCU*AAAUU*AUGAACCAACCG*CAG*CGAAAG*CGUCUUUU

Length

44 nucleotides

Bulged bases

8RXH|1|S1|C|128, 8RXH|1|S1|A|144, 8RXH|1|S1|U|146

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8RXH|1|S1|G|120
8RXH|1|S1|C|121
8RXH|1|S1|A|122
8RXH|1|S1|A|123
8RXH|1|S1|A|124
8RXH|1|S1|A|125
8RXH|1|S1|A|126
8RXH|1|S1|U|127
8RXH|1|S1|C|128
8RXH|1|S1|U|129
*
8RXH|1|S1|A|143
8RXH|1|S1|A|144
8RXH|1|S1|A|145
8RXH|1|S1|U|146
8RXH|1|S1|U|147
*
8RXH|1|S1|A|178
8RXH|1|S1|U|179
8RXH|1|S1|G|180
8RXH|1|S1|A|181
8RXH|1|S1|A|182
8RXH|1|S1|C|183
8RXH|1|S1|C|184
8RXH|1|S1|A|185
8RXH|1|S1|A|186
8RXH|1|S1|C|187
8RXH|1|S1|C|188
8RXH|1|S1|G|189
*
8RXH|1|S1|C|236
8RXH|1|S1|A|237
8RXH|1|S1|G|238
*
8RXH|1|S1|C|312
8RXH|1|S1|G|313
8RXH|1|S1|A|314
8RXH|1|S1|A|315
8RXH|1|S1|A|316
8RXH|1|S1|G|317
*
8RXH|1|S1|C|332
8RXH|1|S1|G|333
8RXH|1|S1|U|334
8RXH|1|S1|C|335
8RXH|1|S1|U|336
8RXH|1|S1|U|337
8RXH|1|S1|U|338
8RXH|1|S1|U|339

Current chains

Chain S1

SSU_rRNA_chain_S1

Nearby chains

Chain SE

40S ribosomal protein S4

Chain SG

40S ribosomal protein S6

Chain SK

40S ribosomal protein S8