J6_8T3A_001
3D structure
- PDB id
- 8T3A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, sordarin, and hibernating factor Los2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.86 Å
Loop
- Sequence
- GAGUAC*GGAAAAGAAAC*GGAUU*AAAAG*CUAAAUAUUGG*CAUC
- Length
- 42 nucleotides
- Bulged bases
- 8T3A|1|A1|A|67, 8T3A|1|A1|U|329, 8T3A|1|A4|U|34
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8T3A|1|A1|G|22
8T3A|1|A1|A|23
8T3A|1|A1|G|24
8T3A|1|A1|U|25
8T3A|1|A1|A|26
8T3A|1|A1|C|27
*
8T3A|1|A1|G|58
8T3A|1|A1|G|59
8T3A|1|A1|A|60
8T3A|1|A1|A|61
8T3A|1|A1|A|62
8T3A|1|A1|A|63
8T3A|1|A1|G|64
8T3A|1|A1|A|65
8T3A|1|A1|A|66
8T3A|1|A1|A|67
8T3A|1|A1|C|68
*
8T3A|1|A1|G|75
8T3A|1|A1|G|76
8T3A|1|A1|A|77
8T3A|1|A1|U|78
8T3A|1|A1|U|79
*
8T3A|1|A1|A|106
8T3A|1|A1|A|107
8T3A|1|A1|A|108
8T3A|1|A1|A|109
8T3A|1|A1|G|110
*
8T3A|1|A1|C|321
8T3A|1|A1|U|322
8T3A|1|A1|A|323
8T3A|1|A1|A|324
8T3A|1|A1|A|325
8T3A|1|A1|U|326
8T3A|1|A1|A|327
8T3A|1|A1|U|328
8T3A|1|A1|U|329
8T3A|1|A1|G|330
8T3A|1|A1|G|331
*
8T3A|1|A4|C|32
8T3A|1|A4|A|33
8T3A|1|A4|U|34
8T3A|1|A4|C|35
Current chains
- Chain A1
- 25S rRNA
- Chain A4
- 5.8 S rRNA
Nearby chains
- Chain AC
- RPL4A isoform 1
- Chain AL
- 60S ribosomal protein L13-A
- Chain AN
- 60S ribosomal protein L15-A
- Chain Ah
- 60S ribosomal protein L35-A
- Chain Ai
- 60S ribosomal protein L36-A
- Chain Aj
- 60S ribosomal protein L37-A
Coloring options: