J6_8UPO_001

3D structure

PDB id

8UPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class A (TTC-A) containing RfaH bound to ops signal, mRNA with a 21 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

8UPO|1|a|A|223

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UPO|1|a|G|45
8UPO|1|a|G|46
*
8UPO|1|a|C|179
8UPO|1|a|G|180
8UPO|1|a|A|181
8UPO|1|a|A|182
8UPO|1|a|C|183
*
8UPO|1|a|G|214
8UPO|1|a|G|215
8UPO|1|a|A|216
8UPO|1|a|A|217
8UPO|1|a|A|218
8UPO|1|a|A|219
8UPO|1|a|G|220
8UPO|1|a|A|221
8UPO|1|a|A|222
8UPO|1|a|A|223
8UPO|1|a|U|224
*
8UPO|1|a|A|231
8UPO|1|a|G|232
8UPO|1|a|A|233
8UPO|1|a|U|234
8UPO|1|a|U|235
*
8UPO|1|a|A|262
8UPO|1|a|G|263
8UPO|1|a|C|264
8UPO|1|a|A|265
8UPO|1|a|G|266
*
8UPO|1|a|C|426
8UPO|1|a|U|427
8UPO|1|a|A|428
8UPO|1|a|A|429
8UPO|1|a|A|430
8UPO|1|a|U|431
8UPO|1|a|A|432
8UPO|1|a|C|433

Current chains

Chain a

23S rRNA

Nearby chains

Chain m

50S ribosomal protein L34