J6_8UPR_001

3D structure

PDB id

8UPR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class A (TTC-A) containing RfaH bound to ops signal, mRNA with a 21 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

8UPR|1|a|A|223

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UPR|1|a|G|45
8UPR|1|a|G|46
*
8UPR|1|a|C|179
8UPR|1|a|G|180
8UPR|1|a|A|181
8UPR|1|a|A|182
8UPR|1|a|C|183
*
8UPR|1|a|G|214
8UPR|1|a|G|215
8UPR|1|a|A|216
8UPR|1|a|A|217
8UPR|1|a|A|218
8UPR|1|a|A|219
8UPR|1|a|G|220
8UPR|1|a|A|221
8UPR|1|a|A|222
8UPR|1|a|A|223
8UPR|1|a|U|224
*
8UPR|1|a|A|231
8UPR|1|a|G|232
8UPR|1|a|A|233
8UPR|1|a|U|234
8UPR|1|a|U|235
*
8UPR|1|a|A|262
8UPR|1|a|G|263
8UPR|1|a|C|264
8UPR|1|a|A|265
8UPR|1|a|G|266
*
8UPR|1|a|C|426
8UPR|1|a|U|427
8UPR|1|a|A|428
8UPR|1|a|A|429
8UPR|1|a|A|430
8UPR|1|a|U|431
8UPR|1|a|A|432
8UPR|1|a|C|433

Current chains

Chain a

23S rRNA

Nearby chains

Chain m

50S ribosomal protein L34