J6_8UQM_001

3D structure

PDB id

8UQM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH in loaded state, NusA, mRNA with a 24 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

8UQM|1|a|A|223

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UQM|1|a|G|45
8UQM|1|a|G|46
*
8UQM|1|a|C|179
8UQM|1|a|G|180
8UQM|1|a|A|181
8UQM|1|a|A|182
8UQM|1|a|C|183
*
8UQM|1|a|G|214
8UQM|1|a|G|215
8UQM|1|a|A|216
8UQM|1|a|A|217
8UQM|1|a|A|218
8UQM|1|a|A|219
8UQM|1|a|G|220
8UQM|1|a|A|221
8UQM|1|a|A|222
8UQM|1|a|A|223
8UQM|1|a|U|224
*
8UQM|1|a|A|231
8UQM|1|a|G|232
8UQM|1|a|A|233
8UQM|1|a|U|234
8UQM|1|a|U|235
*
8UQM|1|a|A|262
8UQM|1|a|G|263
8UQM|1|a|C|264
8UQM|1|a|A|265
8UQM|1|a|G|266
*
8UQM|1|a|C|426
8UQM|1|a|U|427
8UQM|1|a|A|428
8UQM|1|a|A|429
8UQM|1|a|A|430
8UQM|1|a|U|431
8UQM|1|a|A|432
8UQM|1|a|C|433

Current chains

Chain a

23S rRNA

Nearby chains

Chain m

50S ribosomal protein L34