J6_8URH_001

3D structure

PDB id

8URH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH bound to ops signal, mRNA with a 27 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

8URH|1|a|A|223

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8URH|1|a|G|45
8URH|1|a|G|46
*
8URH|1|a|C|179
8URH|1|a|G|180
8URH|1|a|A|181
8URH|1|a|A|182
8URH|1|a|C|183
*
8URH|1|a|G|214
8URH|1|a|G|215
8URH|1|a|A|216
8URH|1|a|A|217
8URH|1|a|A|218
8URH|1|a|A|219
8URH|1|a|G|220
8URH|1|a|A|221
8URH|1|a|A|222
8URH|1|a|A|223
8URH|1|a|U|224
*
8URH|1|a|A|231
8URH|1|a|G|232
8URH|1|a|A|233
8URH|1|a|U|234
8URH|1|a|U|235
*
8URH|1|a|A|262
8URH|1|a|G|263
8URH|1|a|C|264
8URH|1|a|A|265
8URH|1|a|G|266
*
8URH|1|a|C|426
8URH|1|a|U|427
8URH|1|a|A|428
8URH|1|a|A|429
8URH|1|a|A|430
8URH|1|a|U|431
8URH|1|a|A|432
8URH|1|a|C|433

Current chains

Chain a

23S rRNA

Nearby chains

Chain m

50S ribosomal protein L34