J6_8URY_001

3D structure

PDB id

8URY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH bound to ops signal, NusA, mRNA with a 30 nt long spacer, and fMet-tRNA in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

8URY|1|a|A|223

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8URY|1|a|G|45
8URY|1|a|G|46
*
8URY|1|a|C|179
8URY|1|a|G|180
8URY|1|a|A|181
8URY|1|a|A|182
8URY|1|a|C|183
*
8URY|1|a|G|214
8URY|1|a|G|215
8URY|1|a|A|216
8URY|1|a|A|217
8URY|1|a|A|218
8URY|1|a|A|219
8URY|1|a|G|220
8URY|1|a|A|221
8URY|1|a|A|222
8URY|1|a|A|223
8URY|1|a|U|224
*
8URY|1|a|A|231
8URY|1|a|G|232
8URY|1|a|A|233
8URY|1|a|U|234
8URY|1|a|U|235
*
8URY|1|a|A|262
8URY|1|a|G|263
8URY|1|a|C|264
8URY|1|a|A|265
8URY|1|a|G|266
*
8URY|1|a|C|426
8URY|1|a|U|427
8URY|1|a|A|428
8URY|1|a|A|429
8URY|1|a|A|430
8URY|1|a|U|431
8URY|1|a|A|432
8URY|1|a|C|433

Current chains

Chain a

23S rRNA

Nearby chains

Chain m

50S ribosomal protein L34