J6_8VFT_003
3D structure
- PDB id
- 8VFT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translating 80S rabbit ribosome stalled by emetine with eEF2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- (PSU)UGA*UUUG*CA*(OMU)(OMG)UC*GCCUCACGAUCC*(OMG)GUGUCAGAAAA
- Length
- 38 nucleotides
- Bulged bases
- 8VFT|1|5|G|3922, 8VFT|1|5|C|4337, 8VFT|1|5|A|4376, 8VFT|1|5|A|4378, 8VFT|1|5|A|4379
- QA status
- Modified nucleotides: PSU, OMU, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8VFT|1|5|PSU|3920
8VFT|1|5|U|3921
8VFT|1|5|G|3922
8VFT|1|5|A|3923
*
8VFT|1|5|U|4188
8VFT|1|5|U|4189
8VFT|1|5|U|4190
8VFT|1|5|G|4191
*
8VFT|1|5|C|4204
8VFT|1|5|A|4205
*
8VFT|1|5|OMU|4227
8VFT|1|5|OMG|4228
8VFT|1|5|U|4229
8VFT|1|5|C|4230
*
8VFT|1|5|G|4331
8VFT|1|5|C|4332
8VFT|1|5|C|4333
8VFT|1|5|U|4334
8VFT|1|5|C|4335
8VFT|1|5|A|4336
8VFT|1|5|C|4337
8VFT|1|5|G|4338
8VFT|1|5|A|4339
8VFT|1|5|U|4340
8VFT|1|5|C|4341
8VFT|1|5|C|4342
*
8VFT|1|5|OMG|4370
8VFT|1|5|G|4371
8VFT|1|5|U|4372
8VFT|1|5|G|4373
8VFT|1|5|U|4374
8VFT|1|5|C|4375
8VFT|1|5|A|4376
8VFT|1|5|G|4377
8VFT|1|5|A|4378
8VFT|1|5|A|4379
8VFT|1|5|A|4380
8VFT|1|5|A|4381
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 2
- Transfer RNA; tRNA
- Chain 3
- Transfer RNA; tRNA
- Chain A
- uL2
- Chain N
- eL15
- Chain Q
- eL18
- Chain T
- eL21
- Chain a
- uL15
- Chain b
- eL29
- Chain o
- eL42
Coloring options: