3D structure

PDB id
8VK7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-B
Experimental method
ELECTRON MICROSCOPY
Resolution
3.09 Å

Loop

Sequence
UUCA*UUUA*UG*CGCC*GACUAGUGAUCC*GCUCAACGGAUAAAA
Length
41 nucleotides
Bulged bases
8VK7|1|A|C|2299, 8VK7|1|A|U|2614, 8VK7|1|A|G|2652, 8VK7|1|A|A|2654, 8VK7|1|A|U|2655
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8VK7|1|A|U|2297
8VK7|1|A|U|2298
8VK7|1|A|C|2299
8VK7|1|A|A|2300
*
8VK7|1|A|U|2467
8VK7|1|A|U|2468
8VK7|1|A|U|2469
8VK7|1|A|A|2470
*
8VK7|1|A|U|2482
8VK7|1|A|G|2483
*
8VK7|1|A|C|2505
8VK7|1|A|G|2506
8VK7|1|A|C|2507
8VK7|1|A|C|2508
*
8VK7|1|A|G|2608
8VK7|1|A|A|2609
8VK7|1|A|C|2610
8VK7|1|A|U|2611
8VK7|1|A|A|2612
8VK7|1|A|G|2613
8VK7|1|A|U|2614
8VK7|1|A|G|2615
8VK7|1|A|A|2616
8VK7|1|A|U|2617
8VK7|1|A|C|2618
8VK7|1|A|C|2619
*
8VK7|1|A|G|2645
8VK7|1|A|C|2646
8VK7|1|A|U|2647
8VK7|1|A|C|2648
8VK7|1|A|A|2649
8VK7|1|A|A|2650
8VK7|1|A|C|2651
8VK7|1|A|G|2652
8VK7|1|A|G|2653
8VK7|1|A|A|2654
8VK7|1|A|U|2655
8VK7|1|A|A|2656
8VK7|1|A|A|2657
8VK7|1|A|A|2658
8VK7|1|A|A|2659

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain C
50S ribosomal protein L2
Chain M
50S ribosomal protein L15
Chain X
50S ribosomal protein L27
Chain Y
50S Ribosomal Protein L28
Chain c
50S Ribosomal Protein L33
Chain e
50S ribosomal protein L35

Coloring options:

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