J6_8VKV_001

3D structure

PDB id

8VKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex (TTC-B) containing mRNA with a 33 nt long spacer, ops signal, RfaH, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

8VKV|1|a|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VKV|1|a|G|45
8VKV|1|a|G|46
*
8VKV|1|a|C|179
8VKV|1|a|G|180
8VKV|1|a|A|181
8VKV|1|a|A|182
8VKV|1|a|C|183
*
8VKV|1|a|G|214
8VKV|1|a|G|215
8VKV|1|a|A|216
8VKV|1|a|A|217
8VKV|1|a|A|218
8VKV|1|a|A|219
8VKV|1|a|G|220
8VKV|1|a|A|221
8VKV|1|a|A|222
8VKV|1|a|A|223
8VKV|1|a|U|224
*
8VKV|1|a|A|231
8VKV|1|a|G|232
8VKV|1|a|A|233
8VKV|1|a|U|234
8VKV|1|a|U|235
*
8VKV|1|a|A|262
8VKV|1|a|G|263
8VKV|1|a|C|264
8VKV|1|a|A|265
8VKV|1|a|G|266
*
8VKV|1|a|C|426
8VKV|1|a|U|427
8VKV|1|a|A|428
8VKV|1|a|A|429
8VKV|1|a|A|430
8VKV|1|a|U|431
8VKV|1|a|A|432
8VKV|1|a|C|433

Current chains

Chain a

23S rRNA

Nearby chains

Chain m

50S ribosomal protein L34