J6_8VOP_001

3D structure

PDB id

8VOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex (TTC-B) containing mRNA with a 36 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

8VOP|1|a|A|223

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VOP|1|a|G|45
8VOP|1|a|G|46
*
8VOP|1|a|C|179
8VOP|1|a|G|180
8VOP|1|a|A|181
8VOP|1|a|A|182
8VOP|1|a|C|183
*
8VOP|1|a|G|214
8VOP|1|a|G|215
8VOP|1|a|A|216
8VOP|1|a|A|217
8VOP|1|a|A|218
8VOP|1|a|A|219
8VOP|1|a|G|220
8VOP|1|a|A|221
8VOP|1|a|A|222
8VOP|1|a|A|223
8VOP|1|a|U|224
*
8VOP|1|a|A|231
8VOP|1|a|G|232
8VOP|1|a|A|233
8VOP|1|a|U|234
8VOP|1|a|U|235
*
8VOP|1|a|A|262
8VOP|1|a|G|263
8VOP|1|a|C|264
8VOP|1|a|A|265
8VOP|1|a|G|266
*
8VOP|1|a|C|426
8VOP|1|a|U|427
8VOP|1|a|A|428
8VOP|1|a|A|429
8VOP|1|a|A|430
8VOP|1|a|U|431
8VOP|1|a|A|432
8VOP|1|a|C|433

Current chains

Chain a

23S rRNA

Nearby chains

Chain m

50S ribosomal protein L34