J6_8VOR_001

3D structure

PDB id

8VOR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 51 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

8VOR|1|a|A|223

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VOR|1|a|G|45
8VOR|1|a|G|46
*
8VOR|1|a|C|179
8VOR|1|a|G|180
8VOR|1|a|A|181
8VOR|1|a|A|182
8VOR|1|a|C|183
*
8VOR|1|a|G|214
8VOR|1|a|G|215
8VOR|1|a|A|216
8VOR|1|a|A|217
8VOR|1|a|A|218
8VOR|1|a|A|219
8VOR|1|a|G|220
8VOR|1|a|A|221
8VOR|1|a|A|222
8VOR|1|a|A|223
8VOR|1|a|U|224
*
8VOR|1|a|A|231
8VOR|1|a|G|232
8VOR|1|a|A|233
8VOR|1|a|U|234
8VOR|1|a|U|235
*
8VOR|1|a|A|262
8VOR|1|a|G|263
8VOR|1|a|C|264
8VOR|1|a|A|265
8VOR|1|a|G|266
*
8VOR|1|a|C|426
8VOR|1|a|U|427
8VOR|1|a|A|428
8VOR|1|a|A|429
8VOR|1|a|A|430
8VOR|1|a|U|431
8VOR|1|a|A|432
8VOR|1|a|C|433

Current chains

Chain a

23S rRNA

Nearby chains

Chain m

50S ribosomal protein L34