J6_8VS9_001

3D structure

PDB id

8VS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC

Length

36 nucleotides

Bulged bases

8VS9|1|23S|A|223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VS9|1|23S|G|45
8VS9|1|23S|G|46
*
8VS9|1|23S|C|179
8VS9|1|23S|G|180
8VS9|1|23S|A|181
8VS9|1|23S|A|182
8VS9|1|23S|C|183
*
8VS9|1|23S|G|214
8VS9|1|23S|G|215
8VS9|1|23S|A|216
8VS9|1|23S|A|217
8VS9|1|23S|A|218
8VS9|1|23S|A|219
8VS9|1|23S|G|220
8VS9|1|23S|A|221
8VS9|1|23S|A|222
8VS9|1|23S|A|223
8VS9|1|23S|U|224
*
8VS9|1|23S|A|231
8VS9|1|23S|G|232
8VS9|1|23S|A|233
8VS9|1|23S|U|234
8VS9|1|23S|U|235
*
8VS9|1|23S|A|262
8VS9|1|23S|G|263
8VS9|1|23S|C|264
8VS9|1|23S|A|265
8VS9|1|23S|G|266
*
8VS9|1|23S|C|426
8VS9|1|23S|U|427
8VS9|1|23S|A|428
8VS9|1|23S|A|429
8VS9|1|23S|A|430
8VS9|1|23S|U|431
8VS9|1|23S|A|432
8VS9|1|23S|C|433

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain L34

50S ribosomal protein L34