J6_8VVQ_003

3D structure

PDB id

8VVQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from merged datasets

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UUGA*UUUG*CA*UGUC*GCCUCACGAUCC*GGUGUCAGAAAA

Length

38 nucleotides

Bulged bases

8VVQ|1|WA|G|3924, 8VVQ|1|WA|A|4378, 8VVQ|1|WA|A|4380, 8VVQ|1|WA|A|4381

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VVQ|1|WA|U|3922
8VVQ|1|WA|U|3923
8VVQ|1|WA|G|3924
8VVQ|1|WA|A|3925
*
8VVQ|1|WA|U|4190
8VVQ|1|WA|U|4191
8VVQ|1|WA|U|4192
8VVQ|1|WA|G|4193
*
8VVQ|1|WA|C|4206
8VVQ|1|WA|A|4207
*
8VVQ|1|WA|U|4229
8VVQ|1|WA|G|4230
8VVQ|1|WA|U|4231
8VVQ|1|WA|C|4232
*
8VVQ|1|WA|G|4333
8VVQ|1|WA|C|4334
8VVQ|1|WA|C|4335
8VVQ|1|WA|U|4336
8VVQ|1|WA|C|4337
8VVQ|1|WA|A|4338
8VVQ|1|WA|C|4339
8VVQ|1|WA|G|4340
8VVQ|1|WA|A|4341
8VVQ|1|WA|U|4342
8VVQ|1|WA|C|4343
8VVQ|1|WA|C|4344
*
8VVQ|1|WA|G|4372
8VVQ|1|WA|G|4373
8VVQ|1|WA|U|4374
8VVQ|1|WA|G|4375
8VVQ|1|WA|U|4376
8VVQ|1|WA|C|4377
8VVQ|1|WA|A|4378
8VVQ|1|WA|G|4379
8VVQ|1|WA|A|4380
8VVQ|1|WA|A|4381
8VVQ|1|WA|A|4382
8VVQ|1|WA|A|4383

Current chains

Chain WA

28S rRNA

Nearby chains

Chain A

uL2

Chain AA

L29

Chain M

L15

Chain NA

eL42

Chain P

eL18

Chain S

eL21

Chain SA

Transfer RNA; tRNA

Chain TA

Transfer RNA; tRNA

Chain Z

L27A