J6_8VVV_002
3D structure
- PDB id
- 8VVV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian ribosomes bound to Anisomycin in the nonrotated conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGAG*CGCAA*UGAAG*CGAG*CGG*CACGAG
- Length
- 27 nucleotides
- Bulged bases
- 8VVV|1|5|C|1507, 8VVV|1|5|G|1508
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8VVV|1|5|C|1358
8VVV|1|5|G|1359
8VVV|1|5|A|1360
8VVV|1|5|G|1361
*
8VVV|1|5|C|1390
8VVV|1|5|G|1391
8VVV|1|5|C|1392
8VVV|1|5|A|1393
8VVV|1|5|A|1394
*
8VVV|1|5|U|1401
8VVV|1|5|G|1402
8VVV|1|5|A|1403
8VVV|1|5|A|1404
8VVV|1|5|G|1405
*
8VVV|1|5|C|1424
8VVV|1|5|G|1425
8VVV|1|5|A|1426
8VVV|1|5|G|1427
*
8VVV|1|5|C|1470
8VVV|1|5|G|1471
8VVV|1|5|G|1472
*
8VVV|1|5|C|1505
8VVV|1|5|A|1506
8VVV|1|5|C|1507
8VVV|1|5|G|1508
8VVV|1|5|A|1509
8VVV|1|5|G|1510
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain C
- uL4
- Chain L
- eL13
- Chain Q
- eL18
- Chain a
- uL15
- Chain b
- eL29
- Chain i
- eL36
Coloring options: