J6_8WHY_001

3D structure

PDB id

8WHY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GC*GGAAC*GGAAGAGAAAA*UGAUU*AGGAUG*CUGAAUAC

Length

37 nucleotides

Bulged bases

8WHY|1|A|A|222, 8WHY|1|A|U|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8WHY|1|A|G|42
8WHY|1|A|C|43
*
8WHY|1|A|G|178
8WHY|1|A|G|179
8WHY|1|A|A|180
8WHY|1|A|A|181
8WHY|1|A|C|182
*
8WHY|1|A|G|213
8WHY|1|A|G|214
8WHY|1|A|A|215
8WHY|1|A|A|216
8WHY|1|A|G|217
8WHY|1|A|A|218
8WHY|1|A|G|219
8WHY|1|A|A|220
8WHY|1|A|A|221
8WHY|1|A|A|222
8WHY|1|A|A|223
*
8WHY|1|A|U|231
8WHY|1|A|G|232
8WHY|1|A|A|233
8WHY|1|A|U|234
8WHY|1|A|U|235
*
8WHY|1|A|A|262
8WHY|1|A|G|263
8WHY|1|A|G|264
8WHY|1|A|A|265
8WHY|1|A|U|266
8WHY|1|A|G|267
*
8WHY|1|A|C|514
8WHY|1|A|U|515
8WHY|1|A|G|516
8WHY|1|A|A|517
8WHY|1|A|A|518
8WHY|1|A|U|519
8WHY|1|A|A|520
8WHY|1|A|C|521

Current chains

Chain A

23S rRNA

Nearby chains

Chain 7

50S ribosomal protein L34