J6_8WHY_002
3D structure
- PDB id
- 8WHY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome and RafH.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UUCA*UUUA*UG*CGCC*GACUAGUGAUCC*GCUCAACGGAUAAAA
- Length
- 41 nucleotides
- Bulged bases
- 8WHY|1|A|C|2299, 8WHY|1|A|A|2612, 8WHY|1|A|U|2614, 8WHY|1|A|G|2652, 8WHY|1|A|A|2654, 8WHY|1|A|U|2655
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8WHY|1|A|U|2297
8WHY|1|A|U|2298
8WHY|1|A|C|2299
8WHY|1|A|A|2300
*
8WHY|1|A|U|2467
8WHY|1|A|U|2468
8WHY|1|A|U|2469
8WHY|1|A|A|2470
*
8WHY|1|A|U|2482
8WHY|1|A|G|2483
*
8WHY|1|A|C|2505
8WHY|1|A|G|2506
8WHY|1|A|C|2507
8WHY|1|A|C|2508
*
8WHY|1|A|G|2608
8WHY|1|A|A|2609
8WHY|1|A|C|2610
8WHY|1|A|U|2611
8WHY|1|A|A|2612
8WHY|1|A|G|2613
8WHY|1|A|U|2614
8WHY|1|A|G|2615
8WHY|1|A|A|2616
8WHY|1|A|U|2617
8WHY|1|A|C|2618
8WHY|1|A|C|2619
*
8WHY|1|A|G|2645
8WHY|1|A|C|2646
8WHY|1|A|U|2647
8WHY|1|A|C|2648
8WHY|1|A|A|2649
8WHY|1|A|A|2650
8WHY|1|A|C|2651
8WHY|1|A|G|2652
8WHY|1|A|G|2653
8WHY|1|A|A|2654
8WHY|1|A|U|2655
8WHY|1|A|A|2656
8WHY|1|A|A|2657
8WHY|1|A|A|2658
8WHY|1|A|A|2659
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 1
- 50S ribosomal protein L28
- Chain 6
- 50S ribosomal protein L33A
- Chain 8
- 50S ribosomal protein L35
- Chain E
- 50S ribosomal protein L2
- Chain O
- 50S ribosomal protein L15
- Chain Z
- 50S ribosomal protein L27
Coloring options: