J6_8WV1_004

3D structure

PDB id

8WV1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ambient Temperature Structure of 50S Ribosomal Subunit from Thermus Thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.99 Å

Loop

Sequence

GC*GGAACC*GAGGAGAGGAAAG*CGACU*ACCAG*CUAAGUAC

Length

39 nucleotides

Bulged bases

8WV1|1|a|A|212

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8WV1|1|a|G|44
8WV1|1|a|C|45
*
8WV1|1|a|G|168
8WV1|1|a|G|169
8WV1|1|a|A|170
8WV1|1|a|A|171
8WV1|1|a|C|172
8WV1|1|a|C|173
*
8WV1|1|a|G|201
8WV1|1|a|A|202
8WV1|1|a|G|203
8WV1|1|a|G|204
8WV1|1|a|A|205
8WV1|1|a|G|206
8WV1|1|a|A|207
8WV1|1|a|G|208
8WV1|1|a|G|209
8WV1|1|a|A|210
8WV1|1|a|A|211
8WV1|1|a|A|212
8WV1|1|a|G|213
*
8WV1|1|a|C|220
8WV1|1|a|G|221
8WV1|1|a|A|222
8WV1|1|a|C|223
8WV1|1|a|U|224
*
8WV1|1|a|A|251
8WV1|1|a|C|252
8WV1|1|a|C|253
8WV1|1|a|A|254
8WV1|1|a|G|255
*
8WV1|1|a|C|453
8WV1|1|a|U|454
8WV1|1|a|A|455
8WV1|1|a|A|456
8WV1|1|a|G|457
8WV1|1|a|U|458
8WV1|1|a|A|459
8WV1|1|a|C|460

Current chains

Chain a

23S rRNA

Nearby chains

Chain 7

50S ribosomal protein L34

Chain e

50S ribosomal protein L4