J6_8Y5O_002
3D structure
- PDB id
- 8Y5O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-B state 3 (subclass1) containing mRNA with 30-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- UUUA*UUUG*CU*AGCA*UCAUAGUGAUCC*GCUCAACGGAUAAAA
- Length
- 41 nucleotides
- Bulged bases
- 8Y5O|1|1|U|2076, 8Y5O|1|1|A|2388, 8Y5O|1|1|U|2390, 8Y5O|1|1|G|2428, 8Y5O|1|1|A|2430, 8Y5O|1|1|U|2431
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8Y5O|1|1|U|2074
8Y5O|1|1|U|2075
8Y5O|1|1|U|2076
8Y5O|1|1|A|2077
*
8Y5O|1|1|U|2243
8Y5O|1|1|U|2244
8Y5O|1|1|U|2245
8Y5O|1|1|G|2246
*
8Y5O|1|1|C|2258
8Y5O|1|1|U|2259
*
8Y5O|1|1|A|2281
8Y5O|1|1|G|2282
8Y5O|1|1|C|2283
8Y5O|1|1|A|2284
*
8Y5O|1|1|U|2384
8Y5O|1|1|C|2385
8Y5O|1|1|A|2386
8Y5O|1|1|U|2387
8Y5O|1|1|A|2388
8Y5O|1|1|G|2389
8Y5O|1|1|U|2390
8Y5O|1|1|G|2391
8Y5O|1|1|A|2392
8Y5O|1|1|U|2393
8Y5O|1|1|C|2394
8Y5O|1|1|C|2395
*
8Y5O|1|1|G|2421
8Y5O|1|1|C|2422
8Y5O|1|1|U|2423
8Y5O|1|1|C|2424
8Y5O|1|1|A|2425
8Y5O|1|1|A|2426
8Y5O|1|1|C|2427
8Y5O|1|1|G|2428
8Y5O|1|1|G|2429
8Y5O|1|1|A|2430
8Y5O|1|1|U|2431
8Y5O|1|1|A|2432
8Y5O|1|1|A|2433
8Y5O|1|1|A|2434
8Y5O|1|1|A|2435
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain 6
- Transfer RNA; tRNA
- Chain C
- 50S ribosomal protein L33
- Chain E
- 50S ribosomal protein L35
- Chain b
- 50S ribosomal protein L2
- Chain l
- 50S ribosomal protein L15
- Chain w
- 50S ribosomal protein L27
- Chain x
- 50S ribosomal protein L28
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