J6_8YDG_001
3D structure
- PDB id
- 8YDG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-B state 3 (subclass2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.1 Å
Loop
- Sequence
- GG*CGAACC*GAGGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC
- Length
- 39 nucleotides
- Bulged bases
- 8YDG|1|1|A|223
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8YDG|1|1|G|45
8YDG|1|1|G|46
*
8YDG|1|1|C|179
8YDG|1|1|G|180
8YDG|1|1|A|181
8YDG|1|1|A|182
8YDG|1|1|C|183
8YDG|1|1|C|184
*
8YDG|1|1|G|212
8YDG|1|1|A|213
8YDG|1|1|G|214
8YDG|1|1|G|215
8YDG|1|1|A|216
8YDG|1|1|A|217
8YDG|1|1|A|218
8YDG|1|1|A|219
8YDG|1|1|G|220
8YDG|1|1|A|221
8YDG|1|1|A|222
8YDG|1|1|A|223
8YDG|1|1|U|224
*
8YDG|1|1|A|231
8YDG|1|1|G|232
8YDG|1|1|A|233
8YDG|1|1|U|234
8YDG|1|1|U|235
*
8YDG|1|1|A|262
8YDG|1|1|G|263
8YDG|1|1|C|264
8YDG|1|1|A|265
8YDG|1|1|G|266
*
8YDG|1|1|C|426
8YDG|1|1|U|427
8YDG|1|1|A|428
8YDG|1|1|A|429
8YDG|1|1|A|430
8YDG|1|1|U|431
8YDG|1|1|A|432
8YDG|1|1|C|433
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain D
- 50S ribosomal protein L34
Coloring options: