J6_8YDH_001
3D structure
- PDB id
- 8YDH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-P state 1 (subclass1) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.55 Å
Loop
- Sequence
- GG*CGAAC*GGAAAAGAAAU*AGAUU*AGCAG*CUAAAUAC
- Length
- 36 nucleotides
- Bulged bases
- 8YDH|1|1|A|223
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8YDH|1|1|G|45
8YDH|1|1|G|46
*
8YDH|1|1|C|179
8YDH|1|1|G|180
8YDH|1|1|A|181
8YDH|1|1|A|182
8YDH|1|1|C|183
*
8YDH|1|1|G|214
8YDH|1|1|G|215
8YDH|1|1|A|216
8YDH|1|1|A|217
8YDH|1|1|A|218
8YDH|1|1|A|219
8YDH|1|1|G|220
8YDH|1|1|A|221
8YDH|1|1|A|222
8YDH|1|1|A|223
8YDH|1|1|U|224
*
8YDH|1|1|A|231
8YDH|1|1|G|232
8YDH|1|1|A|233
8YDH|1|1|U|234
8YDH|1|1|U|235
*
8YDH|1|1|A|262
8YDH|1|1|G|263
8YDH|1|1|C|264
8YDH|1|1|A|265
8YDH|1|1|G|266
*
8YDH|1|1|C|426
8YDH|1|1|U|427
8YDH|1|1|A|428
8YDH|1|1|A|429
8YDH|1|1|A|430
8YDH|1|1|U|431
8YDH|1|1|A|432
8YDH|1|1|C|433
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain D
- 50S ribosomal protein L34
Coloring options: