J6_8YLR_002
3D structure
- PDB id
- 8YLR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UUGA*UUUG*CA*UGUC*GCCUAUCGAUCC*GGUGCCAGAAAA
- Length
- 38 nucleotides
- Bulged bases
- 8YLR|1|A|G|2418, 8YLR|1|A|C|2760, 8YLR|1|A|A|2799, 8YLR|1|A|A|2801, 8YLR|1|A|A|2802, 8YLR|1|A|A|2803
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8YLR|1|A|U|2416
8YLR|1|A|U|2417
8YLR|1|A|G|2418
8YLR|1|A|A|2419
*
8YLR|1|A|U|2611
8YLR|1|A|U|2612
8YLR|1|A|U|2613
8YLR|1|A|G|2614
*
8YLR|1|A|C|2627
8YLR|1|A|A|2628
*
8YLR|1|A|U|2650
8YLR|1|A|G|2651
8YLR|1|A|U|2652
8YLR|1|A|C|2653
*
8YLR|1|A|G|2754
8YLR|1|A|C|2755
8YLR|1|A|C|2756
8YLR|1|A|U|2757
8YLR|1|A|A|2758
8YLR|1|A|U|2759
8YLR|1|A|C|2760
8YLR|1|A|G|2761
8YLR|1|A|A|2762
8YLR|1|A|U|2763
8YLR|1|A|C|2764
8YLR|1|A|C|2765
*
8YLR|1|A|G|2793
8YLR|1|A|G|2794
8YLR|1|A|U|2795
8YLR|1|A|G|2796
8YLR|1|A|C|2797
8YLR|1|A|C|2798
8YLR|1|A|A|2799
8YLR|1|A|G|2800
8YLR|1|A|A|2801
8YLR|1|A|A|2802
8YLR|1|A|A|2803
8YLR|1|A|A|2804
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain D
- Large ribosomal subunit protein uL2A
- Chain P
- Large ribosomal subunit protein eL15A
- Chain S
- Large ribosomal subunit protein eL18A
- Chain V
- Large ribosomal subunit protein eL21A
- Chain c
- Large ribosomal subunit protein uL15
- Chain d
- Large ribosomal subunit protein eL29
- Chain q
- Large ribosomal subunit protein eL42A
- Chain u
- Transfer RNA; tRNA
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