J6_8ZH3_002
3D structure
- PDB id
- 8ZH3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with A/P-P/E tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UUGA*UUUG*CA*UGUC*GCCUAUCGAUCC*GGUGCCAGAAAA
- Length
- 38 nucleotides
- Bulged bases
- 8ZH3|1|LA|G|2418, 8ZH3|1|LA|C|2760, 8ZH3|1|LA|A|2799, 8ZH3|1|LA|A|2801, 8ZH3|1|LA|A|2802
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8ZH3|1|LA|U|2416
8ZH3|1|LA|U|2417
8ZH3|1|LA|G|2418
8ZH3|1|LA|A|2419
*
8ZH3|1|LA|U|2611
8ZH3|1|LA|U|2612
8ZH3|1|LA|U|2613
8ZH3|1|LA|G|2614
*
8ZH3|1|LA|C|2627
8ZH3|1|LA|A|2628
*
8ZH3|1|LA|U|2650
8ZH3|1|LA|G|2651
8ZH3|1|LA|U|2652
8ZH3|1|LA|C|2653
*
8ZH3|1|LA|G|2754
8ZH3|1|LA|C|2755
8ZH3|1|LA|C|2756
8ZH3|1|LA|U|2757
8ZH3|1|LA|A|2758
8ZH3|1|LA|U|2759
8ZH3|1|LA|C|2760
8ZH3|1|LA|G|2761
8ZH3|1|LA|A|2762
8ZH3|1|LA|U|2763
8ZH3|1|LA|C|2764
8ZH3|1|LA|C|2765
*
8ZH3|1|LA|G|2793
8ZH3|1|LA|G|2794
8ZH3|1|LA|U|2795
8ZH3|1|LA|G|2796
8ZH3|1|LA|C|2797
8ZH3|1|LA|C|2798
8ZH3|1|LA|A|2799
8ZH3|1|LA|G|2800
8ZH3|1|LA|A|2801
8ZH3|1|LA|A|2802
8ZH3|1|LA|A|2803
8ZH3|1|LA|A|2804
Current chains
- Chain LA
- 25S rRNA (3393-MER)
Nearby chains
- Chain LD
- Large ribosomal subunit protein uL2A
- Chain LP
- Large ribosomal subunit protein eL15A
- Chain LS
- Large ribosomal subunit protein eL18A
- Chain LV
- Large ribosomal subunit protein eL21A
- Chain Lc
- Large ribosomal subunit protein uL15
- Chain Ld
- Large ribosomal subunit protein eL29
- Chain Lq
- Large ribosomal subunit protein eL42A
- Chain Tb
- Transfer RNA; tRNA
Coloring options: