J6_8ZHC_001
3D structure
- PDB id
- 8ZHC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- GAGUAC*GGAAAAGAAAC*GGAUU*AAAAG*CUAAAUAUUGG*CAUC
- Length
- 42 nucleotides
- Bulged bases
- 8ZHC|1|LA|A|67, 8ZHC|1|LA|U|329, 8ZHC|1|LC|U|34
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8ZHC|1|LA|G|22
8ZHC|1|LA|A|23
8ZHC|1|LA|G|24
8ZHC|1|LA|U|25
8ZHC|1|LA|A|26
8ZHC|1|LA|C|27
*
8ZHC|1|LA|G|58
8ZHC|1|LA|G|59
8ZHC|1|LA|A|60
8ZHC|1|LA|A|61
8ZHC|1|LA|A|62
8ZHC|1|LA|A|63
8ZHC|1|LA|G|64
8ZHC|1|LA|A|65
8ZHC|1|LA|A|66
8ZHC|1|LA|A|67
8ZHC|1|LA|C|68
*
8ZHC|1|LA|G|75
8ZHC|1|LA|G|76
8ZHC|1|LA|A|77
8ZHC|1|LA|U|78
8ZHC|1|LA|U|79
*
8ZHC|1|LA|A|106
8ZHC|1|LA|A|107
8ZHC|1|LA|A|108
8ZHC|1|LA|A|109
8ZHC|1|LA|G|110
*
8ZHC|1|LA|C|321
8ZHC|1|LA|U|322
8ZHC|1|LA|A|323
8ZHC|1|LA|A|324
8ZHC|1|LA|A|325
8ZHC|1|LA|U|326
8ZHC|1|LA|A|327
8ZHC|1|LA|U|328
8ZHC|1|LA|U|329
8ZHC|1|LA|G|330
8ZHC|1|LA|G|331
*
8ZHC|1|LC|C|32
8ZHC|1|LC|A|33
8ZHC|1|LC|U|34
8ZHC|1|LC|C|35
Current chains
- Chain LA
- 25S rRNA (3393-MER)
- Chain LC
- 5.8S rRNA (158-MER)
Nearby chains
- Chain LF
- Large ribosomal subunit protein uL4A
- Chain LN
- Large ribosomal subunit protein eL13A
- Chain LP
- Large ribosomal subunit protein eL15A
- Chain Lj
- Large ribosomal subunit protein uL29A
- Chain Lk
- Large ribosomal subunit protein eL36A
- Chain Ll
- Large ribosomal subunit protein eL37A
Coloring options: